Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I09
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0979 - 8270980-8271654,8271984-8272088                           31   0.61 
10_01_0020 + 239026-239514                                             27   7.5  
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984...    27   7.5  
01_06_0066 - 26113761-26114683,26115031-26115106,26115204-261154...    27   7.5  

>07_01_0979 - 8270980-8271654,8271984-8272088
          Length = 259

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 177 RWSQQRSCILQHRCCHCRNGR-WW 109
           RW ++RS ++    CHC+  + WW
Sbjct: 232 RWQRERSVVIPRSSCHCQRVKHWW 255


>10_01_0020 + 239026-239514
          Length = 162

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 177 RWSQQRSCILQHRCCHCRNG--RWW 109
           RW ++RS ++    CHC+    RW+
Sbjct: 79  RWQRERSVVIPRSSCHCQRVKLRWF 103


>07_03_0739 -
           21096684-21096742,21096822-21097076,21097206-21098498,
           21098616-21098688
          Length = 559

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 308 VSGVGHGVGDTVKADVRELAADGDSFVFSTN 216
           VS  GH  G  +++ V E  ADGDS     N
Sbjct: 277 VSESGHPSGGRIRSGVTEANADGDSVATKAN 307


>01_06_0066 -
           26113761-26114683,26115031-26115106,26115204-26115401,
           26115829-26116014,26116292-26116447,26116486-26116731,
           26116832-26117149,26117235-26117292,26117472-26117837,
           26119300-26119604
          Length = 943

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 302 GVGHGVGDTVKADVRELAADGDSFVFSTNVLQLTG 198
           G GHG GD   A  REL+ DG  +  S+ +L   G
Sbjct: 48  GAGHGGGDP--ALERELSRDGSHYSISSAILPSLG 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,813,596
Number of Sequences: 37544
Number of extensions: 146958
Number of successful extensions: 389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)