Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I09
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   28   4.4  
SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)                      28   4.4  
SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  28   4.4  
SB_10131| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  28   4.4  

>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 278 TVKADVRELAADGDSFVFSTNVLQLTGFLGLLSIAGLNSVAVS 150
           +V  +V +  +DGD  V       LTGFLG  S  G +S A S
Sbjct: 810 SVDQNVNQATSDGDGSVVGFLKTSLTGFLGPSSSEGTSSSAAS 852


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 126  DNDNIGVEGYSYAVETSDGK-QAQETGQLKNVGTENE 233
            DND++  E  S  ++ SDGK  +Q  G+  N  T N+
Sbjct: 1749 DNDHVDKERASTPIDNSDGKPNSQSQGRTSNQPTLNQ 1785


>SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)
          Length = 340

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 126 DNDNIGVEGYSYAVETSDGK-QAQETGQLKNVGTENE 233
           DND++  E  S  ++ SDGK  +Q  G+  N  T N+
Sbjct: 180 DNDHVDKERASTPIDNSDGKPNSQSQGRTSNQPTLNQ 216


>SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 755

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 216 VGTENEAISVRGQFSYVGLDGVTYTVTYTADEEGFKPSGAHLPQS 350
           +GT     +   QF + G    +   T  A  +  K SGAH+P S
Sbjct: 295 IGTCANMFTSEVQFGHAGASAHSNIETAVAKNKALKSSGAHVPDS 339


>SB_10131| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 609

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 216 VGTENEAISVRGQFSYVGLDGVTYTVTYTADEEGFKPSGAHLPQS 350
           +GT     +   QF + G    +   T  A  +  K SGAH+P S
Sbjct: 444 IGTCANMFTSEVQFGHAGASAHSNIETAVAKNKALKSSGAHVPDS 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,443
Number of Sequences: 59808
Number of extensions: 165304
Number of successful extensions: 429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)