BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_I08 (442 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 189 1e-49 SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 189 2e-49 SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 27 1.3 SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 2.2 SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 24 9.0 >SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 189 bits (461), Expect = 1e-49 Identities = 91/142 (64%), Positives = 111/142 (78%) Frame = +3 Query: 15 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 194 MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60 Query: 195 FPMKQGVLTNSRVRLLMSKGHSC*QTKVVNGKRKRKSVRGCIVDANLSVLALVIVRKGAQ 374 FPM QGVL RVRLL+ GH C + + +G+RKRKSVRGCIV +L+VLAL IV++G Q Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPR-RDGERKRKSVRGCIVGQDLAVLALAIVKQGEQ 119 Query: 375 EIPGLTDGEVPRRLGPKRASKI 440 +IPGLTD VP+RLGPKRASKI Sbjct: 120 DIPGLTDVTVPKRLGPKRASKI 141 >SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 189 bits (460), Expect = 2e-49 Identities = 90/142 (63%), Positives = 111/142 (78%) Frame = +3 Query: 15 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 194 MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60 Query: 195 FPMKQGVLTNSRVRLLMSKGHSC*QTKVVNGKRKRKSVRGCIVDANLSVLALVIVRKGAQ 374 FPM QGVL RVRLL+ GH C + + +G+RKRKSVRGCIV +L+VLAL I+++G Q Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPR-RDGERKRKSVRGCIVGQDLAVLALAIIKQGEQ 119 Query: 375 EIPGLTDGEVPRRLGPKRASKI 440 +IPGLTD VP+RLGPKRASKI Sbjct: 120 DIPGLTDVTVPKRLGPKRASKI 141 >SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 703 Score = 27.1 bits (57), Expect = 1.3 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -2 Query: 291 SYRSRPWSVSKSGLLTSRDVHGC*SGL 211 SYR PW V+ G+L + G SGL Sbjct: 394 SYRDLPWRVADFGVLHRNEFSGALSGL 420 >SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 474 Score = 26.2 bits (55), Expect = 2.2 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 259 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 176 EWP +K +LLVRT + PC + P Sbjct: 26 EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53 >SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 720 Score = 24.2 bits (50), Expect = 9.0 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 57 LFEVVDEHKLRIFYEKRMGAEVDADLLGDEW 149 +FE V EH L Y+K + ++D L+ W Sbjct: 349 VFEYVLEHTLPHLYQKIIELDMDLKLITINW 379 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,726,085 Number of Sequences: 5004 Number of extensions: 32230 Number of successful extensions: 63 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 61 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 160149590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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