Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I08
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   189   1e-49
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   189   2e-49
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    27   1.3  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   2.2  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   9.0  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  189 bits (461), Expect = 1e-49
 Identities = 91/142 (64%), Positives = 111/142 (78%)
 Frame = +3

Query: 15  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 194
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 195 FPMKQGVLTNSRVRLLMSKGHSC*QTKVVNGKRKRKSVRGCIVDANLSVLALVIVRKGAQ 374
           FPM QGVL   RVRLL+  GH C + +  +G+RKRKSVRGCIV  +L+VLAL IV++G Q
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPR-RDGERKRKSVRGCIVGQDLAVLALAIVKQGEQ 119

Query: 375 EIPGLTDGEVPRRLGPKRASKI 440
           +IPGLTD  VP+RLGPKRASKI
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKI 141


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  189 bits (460), Expect = 2e-49
 Identities = 90/142 (63%), Positives = 111/142 (78%)
 Frame = +3

Query: 15  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 194
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 195 FPMKQGVLTNSRVRLLMSKGHSC*QTKVVNGKRKRKSVRGCIVDANLSVLALVIVRKGAQ 374
           FPM QGVL   RVRLL+  GH C + +  +G+RKRKSVRGCIV  +L+VLAL I+++G Q
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPR-RDGERKRKSVRGCIVGQDLAVLALAIIKQGEQ 119

Query: 375 EIPGLTDGEVPRRLGPKRASKI 440
           +IPGLTD  VP+RLGPKRASKI
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKI 141


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 291 SYRSRPWSVSKSGLLTSRDVHGC*SGL 211
           SYR  PW V+  G+L   +  G  SGL
Sbjct: 394 SYRDLPWRVADFGVLHRNEFSGALSGL 420


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 259 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 176
           EWP  +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 57  LFEVVDEHKLRIFYEKRMGAEVDADLLGDEW 149
           +FE V EH L   Y+K +  ++D  L+   W
Sbjct: 349 VFEYVLEHTLPHLYQKIIELDMDLKLITINW 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,085
Number of Sequences: 5004
Number of extensions: 32230
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)