Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I08
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 179 8e-46
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 177 4e-45
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 31 0.54
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 29 1.7
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 27 5.1
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 27 8.8
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 8.8
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 8.8
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 179 bits (436), Expect = 8e-46
Identities = 86/143 (60%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Frame = +3
Query: 15 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 194
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 195 FPMKQGVLTNSRVRLLMSKGHSC*Q-TKVVNGKRKRKSVRGCIVDANLSVLALVIVRKGA 371
FPMKQGVLT+ RVRLL+ +G C + +G+R+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 372 QEIPGLTDGEVPRRLGPKRASKI 440
++PGLTD E PR GPKRASKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKI 143
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 177 bits (430), Expect = 4e-45
Identities = 85/143 (59%), Positives = 107/143 (74%), Gaps = 1/143 (0%)
Frame = +3
Query: 15 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 194
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 195 FPMKQGVLTNSRVRLLMSKGHSC*Q-TKVVNGKRKRKSVRGCIVDANLSVLALVIVRKGA 371
FPMKQGVLT RVRLL+ +G C + +G+R+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 372 QEIPGLTDGEVPRRLGPKRASKI 440
++PGLTD E PR GPKRASKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKI 143
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 30.7 bits (66), Expect = 0.54
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 288 YRSRPWSVSKSGLLTSRDVHGC*SGLPVS*GSPACRYRRQHGEHNLSIRRLEDL--HQLQ 115
YR R S+S+S + R G S PV SPA R HG+ + S+ R L + +
Sbjct: 697 YRRRSRSISRSPVYRDRGRGGGRSRSPVRSRSPAGGKLRSHGDRSRSMSRSRSLSGSRSR 756
Query: 114 RPYAFHRR 91
P H R
Sbjct: 757 SPPPIHNR 764
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 420 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 289
D+D ++ + F + GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 421 GPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTD--LRFLLPF 281
G RRG +P+ + G +C+P T R + R D LR L+ F
Sbjct: 216 GTPRRGAAPAGADGHACSPAWTPRRPRCRRCCCAASDDVDAALRALVEF 264
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 159 VLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 263
VLR+ GND ++ G + NS + ++ + H C
Sbjct: 301 VLRIENGNDGSMITIQHGQVINSGIWIIKTPFHIC 335
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 104 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQ 3
LF++ T V + F L RC V + +LH C Q
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQ 109
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +3
Query: 51 QKLF-EVVDEHKLRIFYEKR 107
+KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,064,397
Number of Sequences: 37544
Number of extensions: 247807
Number of successful extensions: 621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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