Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I08
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              171   3e-43
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   38   0.004
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      28   3.9  
SB_29808| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)              27   9.1  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  171 bits (415), Expect = 3e-43
 Identities = 78/108 (72%), Positives = 91/108 (84%)
 Frame = +3

Query: 117 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC*QTKVVNGKRK 296
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSC + +   G+RK
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPR-RTGERK 60

Query: 297 RKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKI 440
           RKSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KI
Sbjct: 61  RKSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKI 108


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -3

Query: 275 LGLLARVAF*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFSAHTLFI 96
           L + A V    QE   A+  D L H ++L V+T  + E+++ P +   +      HTL I
Sbjct: 246 LVIYAAVTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVI 305

Query: 95  E 93
           E
Sbjct: 306 E 306


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 306 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKI 440
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPV 128


>SB_29808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 324 QQCNHEQTCVSSYRSRPWSVSKSGLLTSRDVHG 226
           Q     Q C+ +Y   P     + L+TSR + G
Sbjct: 471 QSSRRHQVCIKAYHGTPSHADSTELMTSRQLQG 503


>SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 781

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 348 GLRLKG*HQQCNHEQTCVSSYRSRPWSVSKSGLLTS 241
           G+ L G   +   E  CV+  R+ PW ++  GL+ S
Sbjct: 341 GIHLHGCQPRMQVEPCCVAVMRNCPWHMTSCGLVFS 376


>SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)
          Length = 356

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 204 KQGVLTNSRVRLLMSKG--HSC*QTKVVNGKRKRKSVRGCIV 323
           K   L  S+V + +SK   H C   K    K+KRKSVR  ++
Sbjct: 205 KNASLIESQVDVSLSKPNFHCCLDRKPFKRKQKRKSVRQLVI 246


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 394  SVSPGISCAPLRTMTRAKTERLASTMQPRTDL 299
            +V+PG + AP  T+    T  L ST+ P T +
Sbjct: 3512 TVTPGSTAAPETTVAPGTTVALESTVAPETSI 3543


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,051
Number of Sequences: 59808
Number of extensions: 274372
Number of successful extensions: 618
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)