Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I08
(442 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 180 5e-46
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 179 9e-46
At5g07820.1 68418.m00896 expressed protein 27 4.2
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 27 4.2
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH... 27 5.6
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 27 5.6
At4g14160.3 68417.m02185 transport protein, putative similar to ... 27 7.4
At4g14160.2 68417.m02186 transport protein, putative similar to ... 27 7.4
At4g14160.1 68417.m02184 transport protein, putative similar to ... 27 7.4
At5g50330.1 68418.m06233 ABC1 family protein contains Pfam domai... 26 9.8
At3g16580.1 68416.m02120 F-box family protein contains F-box dom... 26 9.8
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi... 26 9.8
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 180 bits (437), Expect = 5e-46
Identities = 88/143 (61%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
Frame = +3
Query: 15 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 194
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 195 FPMKQGVLTNSRVRLLMSKGHSC*QTK-VVNGKRKRKSVRGCIVDANLSVLALVIVRKGA 371
FPMKQGVLT RVRLL+ +G C + G+R+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
Query: 372 QEIPGLTDGEVPRRLGPKRASKI 440
++PGLTD E PR GPKRASKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKI 143
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 179 bits (435), Expect = 9e-46
Identities = 87/143 (60%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
Frame = +3
Query: 15 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 194
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 195 FPMKQGVLTNSRVRLLMSKGHSC*QTK-VVNGKRKRKSVRGCIVDANLSVLALVIVRKGA 371
FPMKQGVLT RVRLL+ +G C + G+R+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120
Query: 372 QEIPGLTDGEVPRRLGPKRASKI 440
++PGLTD E PR GPKRASKI
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKI 143
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 409 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 299
+ TSPSVSP + + K R++ P+ DL
Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 51 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 146
+KL+ EV DE KLR+ YE++ D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
(CHX20) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 842
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -2
Query: 180 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 7
Y+ G H R+L+DL Q R AC H P ++S I L R+T LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 36 PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 203
P CQ + V D + FYEK G E+ E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 341 LSPGHCPQRCTG 376
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 341 LSPGHCPQRCTG 376
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 341 LSPGHCPQRCTG 376
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At5g50330.1 68418.m06233 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 428
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 355 MTRAKTERLASTMQPRTDLRFLLPFTTLVC*QE--WPFDIKRRTRLLVRTPCFI 200
MT + +L + RTD++F L T ++ + FD KR + R CF+
Sbjct: 157 MTDIRNLQLFALYMQRTDIKFDLHSITKEMEKQIGYEFDFKREANAMERIRCFL 210
>At3g16580.1 68416.m02120 F-box family protein contains F-box domain
Pfam:PF00646
Length = 382
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 330 NLSVLALVIVRKGAQEIPGLTDGEVPRRL 416
++S+ ++VR+ +IPGL E+P++L
Sbjct: 71 SVSIDPKIVVRELTLDIPGLESHEIPKKL 99
>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1155
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 54 KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 233
K E +++R+ +R AE+ +LLG + K LR G D+ + Q + +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,332,598
Number of Sequences: 28952
Number of extensions: 183404
Number of successful extensions: 446
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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