Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I06
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    64   1e-11
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    27   1.5  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   6.0  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    24   7.9  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    24   7.9  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    24   7.9  

>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 29/52 (55%), Positives = 39/52 (75%)
 Frame = +3

Query: 27  LDASWVSSASWYFLNVFGLRTIYALVLGENNAADQSKVMQDQMSGATNGYAT 182
           LD  WVSS SWYFLN+FGL+++YAL+LGENNAA  +   +  M+G ++  AT
Sbjct: 166 LDVQWVSSISWYFLNLFGLKSVYALLLGENNAASNA-TNEMGMAGFSSAAAT 216


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 165 WLQTFDPASPSIDPQHCF 112
           WL TFD +SPS+  Q CF
Sbjct: 131 WLATFDHSSPSVQ-QSCF 147


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 57  WYFLNVFGLRTIYAL 101
           WYF+ VFG++ ++++
Sbjct: 96  WYFIRVFGIQELFSV 110


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 201 ESGFGIGWHSHWWLQTFDPASPSIDPQH 118
           E+G  +G HSH W+  ++   P  + +H
Sbjct: 118 EAGCEVGSHSHRWI-NYEGVPPETEYEH 144


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 359 HHNLLTDIDINIIHNANKTSIE 294
           HHN + DIDI  +++A+    E
Sbjct: 133 HHNFVNDIDIADVYSADNRLAE 154


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 90  IYALVLGENNAADQSKVMQDQMSGATNGY 176
           +Y+L     N+   +K+M D  +  + GY
Sbjct: 202 VYSLFASRYNSCKSAKIMTDPQTNVSRGY 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,837
Number of Sequences: 5004
Number of extensions: 28562
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)