Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I06
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0610 + 18944084-18944244,18944471-18944564,18944809-189449...    62   2e-10
07_03_0272 - 16143201-16144937,16145346-16145351,16145406-161455...    28   2.5  
07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815...    27   7.6  

>09_04_0610 +
           18944084-18944244,18944471-18944564,18944809-18944928,
           18945012-18945060,18945985-18946084,18946196-18946257,
           18946365-18946426,18947080-18947187
          Length = 251

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = +3

Query: 12  LELLYLDASWVSSASWYFLNVFGLRTIYALVLGENNAADQSKVMQDQMSGATNGYAT 182
           ++L  +D S+VSS SWYFLN+FGLR +++L+LGE NA D ++ M  QM G   G  T
Sbjct: 160 IDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENANDDAQKMM-QMGGGFGGNPT 215


>07_03_0272 -
           16143201-16144937,16145346-16145351,16145406-16145535,
           16145613-16145773,16146608-16146725,16147328-16147441,
           16149378-16149469,16149906-16149986,16150168-16150473
          Length = 914

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 81  LRTIYALVLGENNAADQSKVMQDQMSGAT 167
           LR +  L LGE N +   K+  DQ++G T
Sbjct: 316 LRNLLGLELGEKNVSIMRKIKADQLAGIT 344


>07_02_0019 + 11877119-11879984,11880316-11880389,11881293-11881511,
            11881557-11881679,11881759-11881859,11881938-11881990,
            11882084-11882269,11882677-11882894
          Length = 1279

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -2

Query: 106  KTRAYIVRKPNTLRKYHEADETHDASRYKSSRE 8
            K R  +  +PN+++   +++E H A ++K++ E
Sbjct: 996  KKRGQMYHQPNSIQGLDDSNEEHHAKKFKANGE 1028


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,387,606
Number of Sequences: 37544
Number of extensions: 173709
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)