Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I06
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38127| Best HMM Match : DUF850 (HMM E-Value=3e-19)                  69   2e-12
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_38127| Best HMM Match : DUF850 (HMM E-Value=3e-19)
          Length = 141

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 29/38 (76%), Positives = 36/38 (94%)
 Frame = +3

Query: 42  VSSASWYFLNVFGLRTIYALVLGENNAADQSKVMQDQM 155
           VSS SWYF+NVFGLR++YALVLGENNAAD +++MQ+QM
Sbjct: 51  VSSVSWYFINVFGLRSMYALVLGENNAADPTRMMQEQM 88



 Score = 36.7 bits (81), Expect = 0.007
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 208 EWEALEITEHKWALATAEADLLSN 279
           EWEALEI EH+WAL   E +++ +
Sbjct: 103 EWEALEIVEHEWALENVEQEMIED 126


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 126  DQSKVMQDQMSGATNGYATRSQSRFQG 206
            D S++  D  S ++NGY ++SQS   G
Sbjct: 2420 DSSRLRADSGSASSNGYHSKSQSILDG 2446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,080,560
Number of Sequences: 59808
Number of extensions: 204667
Number of successful extensions: 642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)