Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I06
         (407 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022807-1|AAH22807.1|  261|Homo sapiens transmembrane protein 1...    93   4e-19
AK222953-1|BAD96673.1|  219|Homo sapiens 30 kDa protein variant ...    93   4e-19
AF157321-1|AAF67487.1|  261|Homo sapiens 30 kDa protein protein.       93   4e-19
AK172843-1|BAD18807.1|  221|Homo sapiens protein ( Homo sapiens ...    91   2e-18
X04654-1|CAA28352.1|  614|Homo sapiens protein ( Human mRNA for ...    29   8.0  

>BC022807-1|AAH22807.1|  261|Homo sapiens transmembrane protein 111
           protein.
          Length = 261

 Score = 92.7 bits (220), Expect = 4e-19
 Identities = 41/64 (64%), Positives = 53/64 (82%)
 Frame = +3

Query: 12  LELLYLDASWVSSASWYFLNVFGLRTIYALVLGENNAADQSKVMQDQMSGATNGYATRSQ 191
           +ELL LDASWVSSASWYFLNVFGLR+IY+L+LG++NAADQS++MQ+QM+GA       + 
Sbjct: 156 IELLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTN 215

Query: 192 SRFQ 203
             F+
Sbjct: 216 KAFK 219



 Score = 36.7 bits (81), Expect = 0.030
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 208 EWEALEITEHKWALATAEADLLS 276
           EWEALE+T+H+WAL   E +L++
Sbjct: 221 EWEALELTDHQWALDDVEEELMA 243


>AK222953-1|BAD96673.1|  219|Homo sapiens 30 kDa protein variant
           protein.
          Length = 219

 Score = 92.7 bits (220), Expect = 4e-19
 Identities = 41/64 (64%), Positives = 53/64 (82%)
 Frame = +3

Query: 12  LELLYLDASWVSSASWYFLNVFGLRTIYALVLGENNAADQSKVMQDQMSGATNGYATRSQ 191
           +ELL LDASWVSSASWYFLNVFGLR+IY+L+LG++NAADQS++MQ+QM+GA       + 
Sbjct: 156 IELLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTN 215

Query: 192 SRFQ 203
             F+
Sbjct: 216 KAFK 219


>AF157321-1|AAF67487.1|  261|Homo sapiens 30 kDa protein protein.
          Length = 261

 Score = 92.7 bits (220), Expect = 4e-19
 Identities = 41/64 (64%), Positives = 53/64 (82%)
 Frame = +3

Query: 12  LELLYLDASWVSSASWYFLNVFGLRTIYALVLGENNAADQSKVMQDQMSGATNGYATRSQ 191
           +ELL LDASWVSSASWYFLNVFGLR+IY+L+LG++NAADQS++MQ+QM+GA       + 
Sbjct: 156 IELLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTN 215

Query: 192 SRFQ 203
             F+
Sbjct: 216 KAFK 219



 Score = 36.7 bits (81), Expect = 0.030
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 208 EWEALEITEHKWALATAEADLLS 276
           EWEALE+T+H+WAL   E +L++
Sbjct: 221 EWEALELTDHQWALDDVEEELMA 243


>AK172843-1|BAD18807.1|  221|Homo sapiens protein ( Homo sapiens
           cDNA FLJ24004 fis, clone KAT01090, highly similar to
           Homo sapiens 30 kDa protein (LOC55831). ).
          Length = 221

 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 40/64 (62%), Positives = 53/64 (82%)
 Frame = +3

Query: 12  LELLYLDASWVSSASWYFLNVFGLRTIYALVLGENNAADQSKVMQDQMSGATNGYATRSQ 191
           +ELL LDASWVSSASW+FLNVFGLR+IY+L+LG++NAADQS++MQ+QM+GA       + 
Sbjct: 156 IELLTLDASWVSSASWHFLNVFGLRSIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTN 215

Query: 192 SRFQ 203
             F+
Sbjct: 216 KAFK 219


>X04654-1|CAA28352.1|  614|Homo sapiens protein ( Human mRNA for U1
           RNA-associated 70K protein. ).
          Length = 614

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 125 GSIEGDAGSNVWSHQWLCHPIPKPLSRQNGKLLKSQ 232
           G+I G  GSN  + Q  C P  +P +R +G  ++++
Sbjct: 2   GTISGGGGSNAATRQVGCAPSGRPSTRPSGTAIRAR 37


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,818,584
Number of Sequences: 237096
Number of extensions: 1045148
Number of successful extensions: 5689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5688
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)