Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I06
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863...    58   2e-09
At5g13740.1 68418.m01599 sugar transporter family protein contai...    27   3.7  
At5g42200.1 68418.m05136 zinc finger (C3HC4-type RING finger) fa...    27   4.8  
At3g25720.1 68416.m03201 hypothetical protein                          27   4.8  
At1g02100.3 68414.m00136 leucine carboxyl methyltransferase fami...    27   6.4  
At1g02100.2 68414.m00134 leucine carboxyl methyltransferase fami...    27   6.4  
At1g02100.1 68414.m00135 leucine carboxyl methyltransferase fami...    27   6.4  
At1g49880.1 68414.m05592 Erv1/Alr family protein similar to SP|Q...    26   8.5  

>At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863:
           Eukaryotic protein of unknown function (DUF850)
          Length = 246

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 26/50 (52%), Positives = 38/50 (76%)
 Frame = +3

Query: 12  LELLYLDASWVSSASWYFLNVFGLRTIYALVLGENNAADQSKVMQDQMSG 161
           ++L  +D S+VSS SWYFLN+FGLR +++L+LG+ NA D ++ M  QM G
Sbjct: 157 IDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGDENAIDDTQRMM-QMGG 205


>At5g13740.1 68418.m01599 sugar transporter family protein contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 486

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 27  LDASWVSSASWYFLNVFGLRTIYALVLGENNAADQSKVMQDQMSGATNGYATRSQSRFQ 203
           L  S + + +   +NV  +  I  L++ +N A DQS+       GA NG A  + S F+
Sbjct: 380 LSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQ------RGAANGIAMTAMSLFK 432


>At5g42200.1 68418.m05136 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 163

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 70  MCLVYGLYMLLFWEKTMLRINR 135
           MC+V+ +Y+ L W  T  RI R
Sbjct: 43  MCIVFLIYLFLLWCSTRRRIER 64


>At3g25720.1 68416.m03201 hypothetical protein 
          Length = 282

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
 Frame = -3

Query: 243 PLVFCDFKSFPF----CL---ESGFGIGWHSHW 166
           P   CD+ + PF    CL   E G G+ W S W
Sbjct: 3   PFWVCDYDTIPFLIAVCLPKAEGGLGLRWFSEW 35


>At1g02100.3 68414.m00136 leucine carboxyl methyltransferase family
           protein contains Pfam PF04072: Leucine carboxyl
           methyltransferase domain; similar to Leucine carboxyl
           methyltransferase  (Protein-leucine O-
           methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
          Length = 332

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 6   LSLELLYLDASWVSSASWYFLNVFG 80
           L+ E L+LD  W  + +W  L V+G
Sbjct: 244 LAKERLFLDNGWQRAVAWDMLKVYG 268


>At1g02100.2 68414.m00134 leucine carboxyl methyltransferase family
           protein contains Pfam PF04072: Leucine carboxyl
           methyltransferase domain; similar to Leucine carboxyl
           methyltransferase  (Protein-leucine O-
           methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
          Length = 306

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 6   LSLELLYLDASWVSSASWYFLNVFG 80
           L+ E L+LD  W  + +W  L V+G
Sbjct: 244 LAKERLFLDNGWQRAVAWDMLKVYG 268


>At1g02100.1 68414.m00135 leucine carboxyl methyltransferase family
           protein contains Pfam PF04072: Leucine carboxyl
           methyltransferase domain; similar to Leucine carboxyl
           methyltransferase  (Protein-leucine O-
           methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens}
          Length = 332

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 6   LSLELLYLDASWVSSASWYFLNVFG 80
           L+ E L+LD  W  + +W  L V+G
Sbjct: 244 LAKERLFLDNGWQRAVAWDMLKVYG 268


>At1g49880.1 68414.m05592 Erv1/Alr family protein similar to
           SP|Q63042 Augmenter of liver regeneration {Rattus
           norvegicus}; contains Pfam profile PF04777: Erv1 / Alr
           family
          Length = 191

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 113 KQCCGSIEGDAGSNVWSHQWLCHPIPKPLSRQNGKLL 223
           K+   S    AGS     QWLCH +   ++R  GKL+
Sbjct: 127 KEILRSNPAQAGSQEEFSQWLCH-VHNTVNRSLGKLV 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,890,228
Number of Sequences: 28952
Number of extensions: 147609
Number of successful extensions: 351
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)