Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I04
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    29   3.6  
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528...    27   8.3  

>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 375 LWIVGYFYLNNICFIIVYILNIFVLGPLR*LNPVYSYNIS 494
           L IVG+ +L  + FI+  +L IF L   +     Y YN S
Sbjct: 220 LKIVGFVFLGVVLFIVTVLLVIFCLSKYQERRSRYDYNRS 259


>03_02_0927 -
           12452262-12452428,12452538-12452607,12452689-12452830,
           12452937-12453117,12454068-12454203
          Length = 231

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 37  FLILCCSLSLTINFCDFVNGSVGGLLSKLRDPLP 138
           FL +C  + L +    F+   V GLL+K   PLP
Sbjct: 79  FLTVCSDVLLILIVVQFIRIKVAGLLNKQPRPLP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,402,390
Number of Sequences: 37544
Number of extensions: 241472
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)