Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I04
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p... 29 3.2
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor... 29 3.2
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ... 29 3.2
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase... 29 3.2
Z81091-5|CAB03142.1| 768|Caenorhabditis elegans Hypothetical pr... 28 5.6
DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein. 28 5.6
DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-couple... 28 5.6
AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical... 28 5.6
AF026211-1|AAB71293.2| 600|Caenorhabditis elegans Sodium:neurot... 28 5.6
Z12017-2|CAA78048.1| 455|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z69383-4|CAA93411.2| 326|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical... 27 9.8
>Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical
protein F27D4.5 protein.
Length = 366
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 103 GGLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRDQTV 210
G LLS +RDP P + +I++R +SED D T+
Sbjct: 197 GLLLSCIRDPNPCIFFEPKILYRLASEDVPTGDYTI 232
>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 34 VFLILC-CSLSLTINFCDFVNGSVG---GLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRD 201
V I C CSL L V VG G+L K +PL +V + IVF + T+ R
Sbjct: 737 VLAIACPCSLGLATPTAVMVGTGVGAANGILIKGGEPLESVHKVTTIVFDKTGTITEGRP 796
Query: 202 QTVTSAT 222
+ V A+
Sbjct: 797 RVVQIAS 803
>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
transporting ATPase protein.
Length = 1238
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 34 VFLILC-CSLSLTINFCDFVNGSVG---GLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRD 201
V I C CSL L V VG G+L K +PL +V + IVF + T+ R
Sbjct: 737 VLAIACPCSLGLATPTAVMVGTGVGAANGILIKGGEPLESVHKVTTIVFDKTGTITEGRP 796
Query: 202 QTVTSAT 222
+ V A+
Sbjct: 797 RVVQIAS 803
>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 34 VFLILC-CSLSLTINFCDFVNGSVG---GLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRD 201
V I C CSL L V VG G+L K +PL +V + IVF + T+ R
Sbjct: 737 VLAIACPCSLGLATPTAVMVGTGVGAANGILIKGGEPLESVHKVTTIVFDKTGTITEGRP 796
Query: 202 QTVTSAT 222
+ V A+
Sbjct: 797 RVVQIAS 803
>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
protein.
Length = 1116
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 34 VFLILC-CSLSLTINFCDFVNGSVG---GLLSKLRDPLPTVDQAFRIVFRDSSEDTDRRD 201
V I C CSL L V VG G+L K +PL +V + IVF + T+ R
Sbjct: 615 VLAIACPCSLGLATPTAVMVGTGVGAANGILIKGGEPLESVHKVTTIVFDKTGTITEGRP 674
Query: 202 QTVTSAT 222
+ V A+
Sbjct: 675 RVVQIAS 681
>Z81091-5|CAB03142.1| 768|Caenorhabditis elegans Hypothetical
protein F55H12.1 protein.
Length = 768
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 381 IVGYFYLNNICFIIVYILNIFVLGPLR*LNPVYSYNISY 497
++G +Y+ I +I++YI+NIF + + + ++ N Y
Sbjct: 200 VIGVYYMILISWIVLYIINIFYVNNMGRCDNPWNQNNCY 238
>DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein.
Length = 600
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 259 LQFEWLFLKPQNELLMSRFDLVYPYPQNYP 170
+++ W F P L++ F +VY +P YP
Sbjct: 493 IEYVWKFCAPATSLVLFVFCVVYYHPVKYP 522
>DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-coupled
betaine transporterprotein protein.
Length = 600
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 259 LQFEWLFLKPQNELLMSRFDLVYPYPQNYP 170
+++ W F P L++ F +VY +P YP
Sbjct: 493 IEYVWKFCAPATSLVLFVFCVVYYHPVKYP 522
>AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical
protein Y46G5A.29 protein.
Length = 770
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +3
Query: 267 YKCQYCDNN*KRWKGKFCRWMCYRIYAHCR-WK 362
Y+C D W G+ C C IY CR WK
Sbjct: 502 YRCDCADG----WMGRNCERPCQDIYGSCRVWK 530
>AF026211-1|AAB71293.2| 600|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 3
protein.
Length = 600
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 259 LQFEWLFLKPQNELLMSRFDLVYPYPQNYP 170
+++ W F P L++ F +VY +P YP
Sbjct: 493 IEYVWKFCAPATSLVLFVFCVVYYHPVKYP 522
>Z12017-2|CAA78048.1| 455|Caenorhabditis elegans Hypothetical
protein R08D7.2 protein.
Length = 455
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 297 KRWKGKFCRWMCYRIYAHCRWKM*TH-LWIVG 389
++ + KFC MCY+ + R ++ H LWI G
Sbjct: 90 RKQRAKFCSEMCYQKSSFVRKQLDEHPLWITG 121
>Z69383-4|CAA93411.2| 326|Caenorhabditis elegans Hypothetical
protein F13E9.9 protein.
Length = 326
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 145 DQAFRIVFRDSSEDTDRRDQTV 210
D A R FRDS+EDTD D +V
Sbjct: 116 DSATRSRFRDSNEDTDSFDGSV 137
>AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical
protein K11D12.9 protein.
Length = 400
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 309 PSIFFSCCHNTDTCSRCYSLS 247
PSI F C + TCS CY S
Sbjct: 360 PSIVFMPCRHLITCSGCYDAS 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,171,231
Number of Sequences: 27780
Number of extensions: 241816
Number of successful extensions: 630
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -