Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I03
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 216 2e-57
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 74 2e-14
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 53 2e-08
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 50 3e-07
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 47 2e-06
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 38 7e-04
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 30 0.19
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 29 0.59
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 25 5.5
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 5.5
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 5.5
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 25 7.3
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 7.3
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 25 7.3
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 7.3
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 25 7.3
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 7.3
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.6
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 216 bits (527), Expect = 2e-57
Identities = 94/164 (57%), Positives = 131/164 (79%)
Frame = +2
Query: 53 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 232
MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 233 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 412
QT+ + ++++NLY+ +E R ++PKTF+ ++S+ LYEKRFGPYF PV+AG+ DNTP+
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPF 119
Query: 413 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELF 544
+C D IGC + EDF+VSGT +EQLYGMCE+++EPNL+PD+LF
Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLF 163
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 73.7 bits (173), Expect = 2e-14
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +2
Query: 71 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVLQ 247
NGG VA+ G +A D R + ++T F P+V ++G L +G G D +++
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 248 RLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 391
R++ R++LY R M ++ + M+ LLY KRF PY++ +AG+D
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGID 118
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 53.2 bits (122), Expect = 2e-08
Identities = 37/155 (23%), Positives = 73/155 (47%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G + A++ +D V +A D R + A + K+ Q+ ++ G A DTQTV L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDLI 433
K+ +++Y ++ T + + S + Y+ + ++AG D V ++ L
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGD-VYSIPLG 141
Query: 434 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538
G ++ + + G+ S +YG C+A + N+ +E
Sbjct: 142 GSLHK-QPLAIGGSGSAFIYGFCDANFRENMTQEE 175
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 49.6 bits (113), Expect = 3e-07
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G +V+A+K D V IA D + + ++ ++G VG G +D Q + QRL
Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101
Query: 254 KFRMNLYE--LKENRIMKPKTFSAMLSNLLYEKR--FGPYFIEPVIAGLDPYDNTPYVCN 421
++ + E + ++P LS +LY +R PY+ + ++AG+D + PYV
Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAF 161
Query: 422 MDLIG 436
DL G
Sbjct: 162 ADLRG 166
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 47.2 bits (107), Expect = 2e-06
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 4/159 (2%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G +A++G +C+ I +++ + Q VS NF K+ + + + GL D + ++ +
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYFIEPVIAGLDPYDNTPYVCN 421
+ ++L + + + ++ + Y + G P+ + +IAG D DNTP V
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148
Query: 422 MDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538
+ G N + + G S+ E W+ L DE
Sbjct: 149 TEPAGIYNAWKATAI-GRASKAAREYLEKNWKEGLSRDE 186
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 38.3 bits (85), Expect = 7e-04
Identities = 36/156 (23%), Positives = 63/156 (40%)
Frame = +2
Query: 71 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQR 250
+G +A + Q + + D R S KV ++ P L L G A D Q
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119
Query: 251 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDL 430
L L++L+ ++ S +LSN+ Y + + ++AG Y + D
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSD- 178
Query: 431 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538
G + + F V G+ S YG+ ++ + +L E
Sbjct: 179 -GTRLKGDLFSV-GSGSTFAYGVLDSGYRWDLSKQE 212
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 475 CSRHYKILGLI-GATDQIHITNIWS 404
CSR+Y+ LI GATD H +IWS
Sbjct: 194 CSRYYRAPELIFGATDYTHAIDIWS 218
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.7 bits (61), Expect = 0.59
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 77 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 226
GA+ +D VA A D G+ S + +VF++G L VG+ G T
Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = -3
Query: 237 VCVSVARPGSPTYNVGPI*NTLGKLVETVWAWIPKRLSVAIATQSWPFI 91
+C +V ++ + T G +VE +W IP + + +A S+ +
Sbjct: 52 ICKAVIEYNYNSHPIAAKYTTHGSIVEFIWTLIPALILILVALPSFKLL 100
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 269 LYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 412
+Y K N+ + + S +L + + +EP A L P TPY
Sbjct: 583 IYSYKRNKNTEVQQRSVEFHLILNDSKLSKTILEPTPAPLPPPRTTPY 630
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = -3
Query: 528 FRLGSQRASHIPYNCSEH----VPDTTKSSGSLGQPIKSI 421
FRL S++ SH P C + P LGQ +KS+
Sbjct: 285 FRLFSEKISHNPTQCLRYERGGTPLLASGRDKLGQQLKSV 324
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/19 (42%), Positives = 17/19 (89%)
Frame = +2
Query: 128 KRFGIQAQTVSTNFPKVFQ 184
+RFG+++ T++++F KVF+
Sbjct: 281 ERFGLKSTTIASSFGKVFR 299
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 516 SQRASHIPYNCSEHVPDTTKSSGSLGQPIKS 424
S+R+SH Y+ S HVP +S + KS
Sbjct: 582 SERSSHSSYHNSSHVPTAAFNSPIMRTSTKS 612
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 212 PGLATDTQTVLQRLKFRMN--LYELKENRIMKPK 307
P L D+ L +L R N +YE K R++KPK
Sbjct: 69 PFLNKDSGVDLLKLHSRSNSRIYEAKPKRVIKPK 102
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -3
Query: 378 ITGSMKYGPNLFSY----NKFDSIAEKVLGFIILFSFSSYKF 265
I S+KYG LFS+ N F + +++ ++SS+ F
Sbjct: 105 ILSSLKYGSTLFSWISVANAFGLLLLRLISIYDFLTYSSWSF 146
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 205 NI*CWSHLKHFRKVG 161
N+ W+H+KH KVG
Sbjct: 172 NVQMWAHVKHIMKVG 186
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = -2
Query: 526 QIGFPEGFTHSVQLFRACSRHYKILGLIGATDQIHITNIWSV 401
++G+ + F + LF S + +LG++ + + +W V
Sbjct: 54 ELGYKQEFRRQLSLFGIFSISFSVLGMLPSVASTLVFGLWYV 95
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 129 NALVSRPKLSPPTFLKCFRWDQHYMLGSLVL 221
+AL+ P + +FL + D+H MLG L L
Sbjct: 357 SALIVAPFILASSFLSRWLEDRHIMLGGLFL 387
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 9.6
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Frame = +2
Query: 185 MGPTLYVGLPGL--ATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLY---EKR 349
M PT YVGLPG +T + LK + + + +++N+L+ EKR
Sbjct: 673 MCPTKYVGLPGFPRLASGKTDRKALKIQFSASDKHSTDFSSFNQSELLVANVLHEICEKR 732
Query: 350 FGPY-----FIEPVIAGLDPYDNTPYVCNMDLIGCPNEPEDFVVS 469
F F GLD D +V + +G P + S
Sbjct: 733 FNSVVSISRFSSIFDLGLDSLDIVYFVRKIRSLGFEANPSIVLTS 777
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,947
Number of Sequences: 5004
Number of extensions: 55093
Number of successful extensions: 172
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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