BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_I03 (545 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 216 2e-57 SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 74 2e-14 SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 53 2e-08 SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 50 3e-07 SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 47 2e-06 SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 38 7e-04 SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 30 0.19 SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 29 0.59 SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 25 5.5 SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 5.5 SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 5.5 SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 25 7.3 SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 7.3 SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 25 7.3 SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 7.3 SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 25 7.3 SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 7.3 SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.6 SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.6 >SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces pombe|chr 3|||Manual Length = 204 Score = 216 bits (527), Expect = 2e-57 Identities = 94/164 (57%), Positives = 131/164 (79%) Frame = +2 Query: 53 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 232 MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60 Query: 233 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 412 QT+ + ++++NLY+ +E R ++PKTF+ ++S+ LYEKRFGPYF PV+AG+ DNTP+ Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPF 119 Query: 413 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELF 544 +C D IGC + EDF+VSGT +EQLYGMCE+++EPNL+PD+LF Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLF 163 >SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosaccharomyces pombe|chr 1|||Manual Length = 225 Score = 73.7 bits (173), Expect = 2e-14 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%) Frame = +2 Query: 71 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVLQ 247 NGG VA+ G +A D R + ++T F P+V ++G L +G G D +++ Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70 Query: 248 RLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 391 R++ R++LY R M ++ + M+ LLY KRF PY++ +AG+D Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGID 118 >SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 53.2 bits (122), Expect = 2e-08 Identities = 37/155 (23%), Positives = 73/155 (47%) Frame = +2 Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253 G + A++ +D V +A D R + A + K+ Q+ ++ G A DTQTV L Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83 Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDLI 433 K+ +++Y ++ T + + S + Y+ + ++AG D V ++ L Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGD-VYSIPLG 141 Query: 434 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538 G ++ + + G+ S +YG C+A + N+ +E Sbjct: 142 GSLHK-QPLAIGGSGSAFIYGFCDANFRENMTQEE 175 >SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces pombe|chr 2|||Manual Length = 262 Score = 49.6 bits (113), Expect = 3e-07 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Frame = +2 Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253 G +V+A+K D V IA D + + ++ ++G VG G +D Q + QRL Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101 Query: 254 KFRMNLYE--LKENRIMKPKTFSAMLSNLLYEKR--FGPYFIEPVIAGLDPYDNTPYVCN 421 ++ + E + ++P LS +LY +R PY+ + ++AG+D + PYV Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAF 161 Query: 422 MDLIG 436 DL G Sbjct: 162 ADLRG 166 >SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces pombe|chr 2|||Manual Length = 259 Score = 47.2 bits (107), Expect = 2e-06 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 4/159 (2%) Frame = +2 Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253 G +A++G +C+ I +++ + Q VS NF K+ + + + GL D + ++ + Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88 Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYFIEPVIAGLDPYDNTPYVCN 421 + ++L + + + ++ + Y + G P+ + +IAG D DNTP V Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148 Query: 422 MDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538 + G N + + G S+ E W+ L DE Sbjct: 149 TEPAGIYNAWKATAI-GRASKAAREYLEKNWKEGLSRDE 186 >SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosaccharomyces pombe|chr 1|||Manual Length = 272 Score = 38.3 bits (85), Expect = 7e-04 Identities = 36/156 (23%), Positives = 63/156 (40%) Frame = +2 Query: 71 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQR 250 +G +A + Q + + D R S KV ++ P L L G A D Q Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119 Query: 251 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDL 430 L L++L+ ++ S +LSN+ Y + + ++AG Y + D Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSD- 178 Query: 431 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538 G + + F V G+ S YG+ ++ + +L E Sbjct: 179 -GTRLKGDLFSV-GSGSTFAYGVLDSGYRWDLSKQE 212 >SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schizosaccharomyces pombe|chr 1|||Manual Length = 387 Score = 30.3 bits (65), Expect = 0.19 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Frame = -2 Query: 475 CSRHYKILGLI-GATDQIHITNIWS 404 CSR+Y+ LI GATD H +IWS Sbjct: 194 CSRYYRAPELIFGATDYTHAIDIWS 218 >SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 498 Score = 28.7 bits (61), Expect = 0.59 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +2 Query: 77 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 226 GA+ +D VA A D G+ S + +VF++G L VG+ G T Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457 >SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 248 Score = 25.4 bits (53), Expect = 5.5 Identities = 11/49 (22%), Positives = 23/49 (46%) Frame = -3 Query: 237 VCVSVARPGSPTYNVGPI*NTLGKLVETVWAWIPKRLSVAIATQSWPFI 91 +C +V ++ + T G +VE +W IP + + +A S+ + Sbjct: 52 ICKAVIEYNYNSHPIAAKYTTHGSIVEFIWTLIPALILILVALPSFKLL 100 >SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schizosaccharomyces pombe|chr 3|||Manual Length = 865 Score = 25.4 bits (53), Expect = 5.5 Identities = 13/48 (27%), Positives = 21/48 (43%) Frame = +2 Query: 269 LYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 412 +Y K N+ + + S +L + + +EP A L P TPY Sbjct: 583 IYSYKRNKNTEVQQRSVEFHLILNDSKLSKTILEPTPAPLPPPRTTPY 630 >SPBC25H2.15 |||programmed cell death protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 396 Score = 25.4 bits (53), Expect = 5.5 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = -3 Query: 528 FRLGSQRASHIPYNCSEH----VPDTTKSSGSLGQPIKSI 421 FRL S++ SH P C + P LGQ +KS+ Sbjct: 285 FRLFSEKISHNPTQCLRYERGGTPLLASGRDKLGQQLKSV 324 >SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 403 Score = 25.0 bits (52), Expect = 7.3 Identities = 8/19 (42%), Positives = 17/19 (89%) Frame = +2 Query: 128 KRFGIQAQTVSTNFPKVFQ 184 +RFG+++ T++++F KVF+ Sbjct: 281 ERFGLKSTTIASSFGKVFR 299 >SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 803 Score = 25.0 bits (52), Expect = 7.3 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -3 Query: 516 SQRASHIPYNCSEHVPDTTKSSGSLGQPIKS 424 S+R+SH Y+ S HVP +S + KS Sbjct: 582 SERSSHSSYHNSSHVPTAAFNSPIMRTSTKS 612 >SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 272 Score = 25.0 bits (52), Expect = 7.3 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = +2 Query: 212 PGLATDTQTVLQRLKFRMN--LYELKENRIMKPK 307 P L D+ L +L R N +YE K R++KPK Sbjct: 69 PFLNKDSGVDLLKLHSRSNSRIYEAKPKRVIKPK 102 >SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1427 Score = 25.0 bits (52), Expect = 7.3 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = -3 Query: 378 ITGSMKYGPNLFSY----NKFDSIAEKVLGFIILFSFSSYKF 265 I S+KYG LFS+ N F + +++ ++SS+ F Sbjct: 105 ILSSLKYGSTLFSWISVANAFGLLLLRLISIYDFLTYSSWSF 146 >SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr 2|||Manual Length = 307 Score = 25.0 bits (52), Expect = 7.3 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -2 Query: 205 NI*CWSHLKHFRKVG 161 N+ W+H+KH KVG Sbjct: 172 NVQMWAHVKHIMKVG 186 >SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces pombe|chr 1|||Manual Length = 567 Score = 25.0 bits (52), Expect = 7.3 Identities = 9/42 (21%), Positives = 21/42 (50%) Frame = -2 Query: 526 QIGFPEGFTHSVQLFRACSRHYKILGLIGATDQIHITNIWSV 401 ++G+ + F + LF S + +LG++ + + +W V Sbjct: 54 ELGYKQEFRRQLSLFGIFSISFSVLGMLPSVASTLVFGLWYV 95 >SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 500 Score = 24.6 bits (51), Expect = 9.6 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 129 NALVSRPKLSPPTFLKCFRWDQHYMLGSLVL 221 +AL+ P + +FL + D+H MLG L L Sbjct: 357 SALIVAPFILASSFLSRWLEDRHIMLGGLFL 387 >SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces pombe|chr 1|||Manual Length = 4924 Score = 24.6 bits (51), Expect = 9.6 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 10/105 (9%) Frame = +2 Query: 185 MGPTLYVGLPGL--ATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLY---EKR 349 M PT YVGLPG +T + LK + + + +++N+L+ EKR Sbjct: 673 MCPTKYVGLPGFPRLASGKTDRKALKIQFSASDKHSTDFSSFNQSELLVANVLHEICEKR 732 Query: 350 FGPY-----FIEPVIAGLDPYDNTPYVCNMDLIGCPNEPEDFVVS 469 F F GLD D +V + +G P + S Sbjct: 733 FNSVVSISRFSSIFDLGLDSLDIVYFVRKIRSLGFEANPSIVLTS 777 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,515,947 Number of Sequences: 5004 Number of extensions: 55093 Number of successful extensions: 172 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 170 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 225926624 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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