Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I03
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                  266   6e-72
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         79   3e-15
SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36)              29   2.5  
SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)             29   3.3  
SB_5367| Best HMM Match : wnt (HMM E-Value=0)                          28   5.7  
SB_48039| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score =  266 bits (653), Expect = 6e-72
 Identities = 117/170 (68%), Positives = 145/170 (85%)
 Frame = +2

Query: 35  FNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLP 214
           F ++  MSI+ YNG A++AM G++CVAIA D+R GIQAQTVS +F K+FQMG  L+VGLP
Sbjct: 65  FRKEAVMSIMEYNGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLP 124

Query: 215 GLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDP 394
           GLATD QT+  RLKFR+NLYEL+E R +KPKTF +M+SNLLYE+RFGPYF+EPVIAGLDP
Sbjct: 125 GLATDVQTISSRLKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDP 184

Query: 395 YDNTPYVCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELF 544
             N P++ +MDLIGCP E +DFVVSGTCSEQ+YGMCE+LW P+L+PD+LF
Sbjct: 185 KTNEPFISSMDLIGCPMETKDFVVSGTCSEQMYGMCESLWVPDLEPDDLF 234


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 45/142 (31%), Positives = 74/142 (52%)
 Frame = +2

Query: 65  AYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVL 244
           A+NGG V+A+ G+D   IA+D R     Q  + + PKV+++  +  +G  G   D  T+ 
Sbjct: 84  AFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLT 143

Query: 245 QRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNM 424
           + +  R+ +YE    + M     + MLS +LY +RF PY+   ++AGLD  +    V + 
Sbjct: 144 KHISARLQMYEHDHGKAMSCTAIAQMLSTMLYYRRFFPYYTYNILAGLDS-EGKGCVFSF 202

Query: 425 DLIGCPNEPEDFVVSGTCSEQL 490
           D +G   E E +   G+ S  L
Sbjct: 203 DPVG-SYEREVYRAGGSASALL 223


>SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36)
          Length = 237

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 519 GSQRASHIPYNCSEHVPDTTKSSGSLGQPIKSILQTYGVLS 397
           GS   SH+P N  + V     SSG+ G P   +L  Y ++S
Sbjct: 128 GSAFPSHVPVNWKQDVAYILYSSGTTGLPKGVLLTHYNLIS 168


>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
          Length = 131

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 374 VIAGLDPYDNTPYVCNMDLIG-CPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELF 544
           + AG D   N   V ++ L G C  +P  F + G+ S  +YG C+A ++  +  +E F
Sbjct: 30  ICAGWDKL-NGGQVYSIPLGGMCIRQP--FTIGGSGSTYIYGHCDATYKSGMSKEECF 84


>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
          Length = 367

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 241 HGLCVSCKTREPNI*CWSHLKHFRKVG 161
           HG+C SC  +     CW  L  FR++G
Sbjct: 217 HGVCGSCNLKT----CWRQLVEFREIG 239


>SB_48039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 527 SDWVPRGLHTFRTIVPSMFQTLQNPRAHWGNRSNPY 420
           S W+ RG+H   +  P     L+ P   W + S PY
Sbjct: 25  SSWLARGVHASNSCSPGDPLVLERPPPRWSSNS-PY 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,652,078
Number of Sequences: 59808
Number of extensions: 414467
Number of successful extensions: 1102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)