Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I03
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 194 3e-50
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 47 8e-06
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 47 8e-06
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 44 9e-05
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 31 0.54
AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine re... 30 0.95
Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical pr... 29 1.7
U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical ... 29 2.9
AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical ... 29 2.9
AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical ... 29 2.9
U39646-4|AAA80370.1| 215|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z66562-3|CAD44123.1| 485|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z66562-2|CAB60289.1| 110|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z66562-1|CAA91464.1| 519|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical ... 27 6.7
AF040661-13|AAG24216.1| 351|Caenorhabditis elegans Hypothetical... 27 6.7
AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical ... 27 6.7
U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF068709-5|AAC19250.2| 332|Caenorhabditis elegans Serpentine re... 27 8.8
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 194 bits (473), Expect = 3e-50
Identities = 89/164 (54%), Positives = 115/164 (70%)
Frame = +2
Query: 53 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 232
MSI++Y GG VVAM G +CV IA+D R G Q T++T+ KV ++ +YVGL G +D
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 233 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 412
+TVL+++ FR NLYEL+ENR +KP+ S M+SNL Y+ RFG YF EP++AGLD N PY
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119
Query: 413 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELF 544
+C MD IGC + P DFV GT E L G+CE W N+KPDELF
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELF 163
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 47.2 bits (107), Expect = 8e-06
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVLQR 250
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 251 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDL 430
L+ R++ Y M + +LS LY +RF PY+ ++AG+D + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGA-VFSYDP 169
Query: 431 IGC 439
IGC
Sbjct: 170 IGC 172
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 47.2 bits (107), Expect = 8e-06
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVLQR 250
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 251 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDL 430
L+ R++ Y M + +LS LY +RF PY+ ++AG+D + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGA-VFSYDP 169
Query: 431 IGC 439
IGC
Sbjct: 170 IGC 172
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 43.6 bits (98), Expect = 9e-05
Identities = 37/155 (23%), Positives = 65/155 (41%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G ++AM+ V + TD R + S K+ + + V G A DTQ +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDLI 433
K+ +++Y + EN+ + S + LY R ++AG D + V + +
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDE-ELGGQVYAIPIG 140
Query: 434 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538
G + SG+ S + G ++ W PNL +E
Sbjct: 141 GFVSRQRS-TASGSGSTFVQGFLDSQWRPNLTLEE 174
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 39.1 bits (87), Expect = 0.002
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Frame = +2
Query: 32 IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGL 211
+F +Y + G V ++G+DC+ I +K+ I A K+ + + +
Sbjct: 17 LFQVEYAQEAVK-KGSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAF 74
Query: 212 PGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRF------GPYFIEP 373
GL+ D + ++ R + Y+L + S ++N ++RF P+ I
Sbjct: 75 AGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANT--KQRFTQSPGRRPFGISM 132
Query: 374 VIAGLDPYDNTP 409
+I G D +D TP
Sbjct: 133 LIGGFD-HDGTP 143
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 38.7 bits (86), Expect = 0.003
Identities = 34/143 (23%), Positives = 59/143 (41%)
Frame = +2
Query: 110 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRLKFRMNLYELKEN 289
+ +A D R S + K+ +G + + G A D Q + + LYEL+E
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 290 RIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDLIGCPNEPEDFVVS 469
+ S +N LY R + ++AG D P + +D G + + V
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD--KKGPQIFKVDSEGDRCQLKVCSV- 199
Query: 470 GTCSEQLYGMCEALWEPNLKPDE 538
G+ S YG+ + ++P + DE
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDE 222
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 31.1 bits (67), Expect = 0.54
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G +V+A++ + V + TD+ N + +++ + + G D LQ +
Sbjct: 17 GTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHW-LQNV 75
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKR--FGPYFIEPVIAGLDPYDNTPYVCNMD 427
R L + ++ + PK L++LLY KR P + V+AG++ + +
Sbjct: 76 IERQVLLWKRFDQDIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGVEEEEKNNKETSTP 135
Query: 428 LIG 436
IG
Sbjct: 136 FIG 138
>AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine
receptor, class t protein27 protein.
Length = 319
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 492 YNCSEHVPDTTKSSGSLGQPIKSIL-QTYGVL 400
YNCS H P+ +PI I+ TYG+L
Sbjct: 16 YNCSAHTPEEWSELNGYKRPIAGIIDMTYGIL 47
>Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical
protein T09E8.2 protein.
Length = 954
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -2
Query: 268 IHSEF*SLKHGLCVSCKTREPNI*CWSHLKHFRKVGGDSLGLDTKAFVRSDSHTVLALHR 89
IHS+ ++K L KT P + C H + S+ + + S VL H
Sbjct: 667 IHSDKMTIKKALASLAKTNRPALICNIHFPD--GIDPFSIIAERRLMYGVQSECVLCAHA 724
Query: 88 NNCTSIV 68
N+CT+++
Sbjct: 725 NDCTAMI 731
>U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical
protein ZK742.3 protein.
Length = 447
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 89 AMKGQDCVAIATDKRFGIQAQTVSTN 166
AMK +AIA G+QAQT TN
Sbjct: 113 AMKSDGALAIAQTNHIGVQAQTAYTN 138
>AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical
protein Y44A6D.5 protein.
Length = 393
Score = 28.7 bits (61), Expect = 2.9
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +2
Query: 224 TDTQTVLQRLKFRMNLYEL-KENRIMK--PKTFS-AMLSNLLYEKRFGPYFIEPVIAGLD 391
TD+ +L + R ++ EL +E +MK K F+ A LS ++EKR +F+ A +
Sbjct: 279 TDSGLLLPGIT-RQSIVELAQEMNLMKVSEKNFTMAQLSRAVHEKRVHEFFVSGTAANVG 337
Query: 392 PYDNTPYVCNMDL 430
P Y C+ +L
Sbjct: 338 PVSEIVY-CDKEL 349
>AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical
protein C24A1.2b protein.
Length = 365
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -3
Query: 219 RPGSPTYNVGPI*NTLGKLVETVWAWI--PKRLSVAIATQSWPFIATTAPPLYAS 61
RP PT + + + T+W WI + S A ATQ W A P AS
Sbjct: 98 RPRPPTVPLPTVTQQIPWQTSTIWPWIQQAQSASTADATQRWLQSALLCPTTSAS 152
>AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical
protein C24A1.2a protein.
Length = 420
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -3
Query: 219 RPGSPTYNVGPI*NTLGKLVETVWAWI--PKRLSVAIATQSWPFIATTAPPLYAS 61
RP PT + + + T+W WI + S A ATQ W A P AS
Sbjct: 153 RPRPPTVPLPTVTQQIPWQTSTIWPWIQQAQSASTADATQRWLQSALLCPTTSAS 207
>U39646-4|AAA80370.1| 215|Caenorhabditis elegans Hypothetical
protein F47B7.6 protein.
Length = 215
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 480 EHVPDTTKSSGSLGQPIKSILQTYGV 403
+H+P +SS S+G P SILQ G+
Sbjct: 134 DHMPHDYQSSNSMGYPTPSILQVGGM 159
>Z66562-3|CAD44123.1| 485|Caenorhabditis elegans Hypothetical
protein F42E11.2c protein.
Length = 485
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -2
Query: 421 ITNIWSVIVRIKTSYHWFNEI----WSESLF 341
+ N +SVI R+ +HW N++ WS F
Sbjct: 7 LINFYSVIPRLNFKFHWTNDVFNLEWSSEYF 37
>Z66562-2|CAB60289.1| 110|Caenorhabditis elegans Hypothetical
protein F42E11.2b protein.
Length = 110
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -2
Query: 421 ITNIWSVIVRIKTSYHWFNEI----WSESLF 341
+ N +SVI R+ +HW N++ WS F
Sbjct: 7 LINFYSVIPRLNFKFHWTNDVFNLEWSSEYF 37
>Z66562-1|CAA91464.1| 519|Caenorhabditis elegans Hypothetical
protein F42E11.2a protein.
Length = 519
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -2
Query: 421 ITNIWSVIVRIKTSYHWFNEI----WSESLF 341
+ N +SVI R+ +HW N++ WS F
Sbjct: 7 LINFYSVIPRLNFKFHWTNDVFNLEWSSEYF 37
>AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical
protein Y47H9C.9 protein.
Length = 829
Score = 27.5 bits (58), Expect = 6.7
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 473 TCSEQLYGMCEALWEP 520
TCS+ ++G+C LW+P
Sbjct: 570 TCSKSVHGVCCGLWDP 585
>AF040661-13|AAG24216.1| 351|Caenorhabditis elegans Hypothetical
protein W10G11.7 protein.
Length = 351
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 96 RAKTVWLSL-RTNALVSRPKLSPPTFLKCFRWDQHYMLGSLVLQLTHK 236
R+ +VW+ + RT A V++P T F W + G+ TH+
Sbjct: 122 RSASVWIGIQRTKACVNKPITVNCTITNSFEWTDNSTTGTDGFLFTHE 169
>AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical
protein R08F11.2 protein.
Length = 333
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 528 FRLGSQRASHIP-YNCSEHVPDTTKSSGSLGQPIKSIL-QTYGVL 400
F+ GS + IP YNCS H P+ + +P+ + TYG++
Sbjct: 5 FKYGS--IAEIPLYNCSAHTPEEWSERDGVRRPLYGLADMTYGLV 47
>U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical
protein F58F12.1 protein.
Length = 163
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 458 FVVSGTCSEQLYGMCEALWEPNLKPDEL 541
FV SGT S + G C+ L E LK +E+
Sbjct: 91 FVSSGTLSVNIDGSCQVLAEEVLKVEEI 118
>AF068709-5|AAC19250.2| 332|Caenorhabditis elegans Serpentine
receptor, class t protein29 protein.
Length = 332
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 528 FRLGSQRASHIP-YNCSEHVPDTTKSSGSLGQPIKSIL-QTYGV 403
F+ GS S IP YNCS H P+ + +P+ I YG+
Sbjct: 5 FKYGS--VSRIPLYNCSAHTPEEWSQRDGVRRPLYGIADMIYGL 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,930,239
Number of Sequences: 27780
Number of extensions: 308356
Number of successful extensions: 769
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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