Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I03
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.2  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 515 PRGLHTFRTIVPSMFQTLQN 456
           P G+HT  +IV +  QTL N
Sbjct: 66  PLGIHTGESIVVAPSQTLSN 85



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 389 DPYDNTPYVCNMD 427
           D YDN   VCNM+
Sbjct: 50  DAYDNCITVCNME 62


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 187 GTNIICWAPWSC 222
           G  +ICW P+ C
Sbjct: 279 GVFLICWVPFFC 290


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 539 VHRASDWVPRGLHTFRTIVPSM 474
           + R  D  P   H F+T+V SM
Sbjct: 157 IERNGDKPPLTYHQFQTVVASM 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,408
Number of Sequences: 438
Number of extensions: 3739
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)