Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I03
(545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2) id... 201 2e-52
At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1) (... 200 4e-52
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 67 6e-12
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 45 3e-05
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 45 4e-05
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 44 7e-05
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 39 0.002
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 39 0.003
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 35 0.031
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 35 0.031
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 35 0.041
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 35 0.041
At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase / homogen... 29 2.7
At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase / homogen... 29 2.7
At3g46850.1 68416.m05085 subtilase family protein contains simil... 28 3.5
At3g46840.1 68416.m05084 subtilase family protein contains simil... 28 3.5
At1g78540.1 68414.m09154 transcription factor-related weak simil... 28 3.5
At4g29790.1 68417.m04242 expressed protein 28 4.7
At4g13700.1 68417.m02128 serine/threonine protein phosphatase fa... 28 4.7
At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00... 27 6.2
At4g19130.1 68417.m02823 replication protein-related similar to ... 27 6.2
At2g44890.1 68415.m05588 cytochrome P450 family protein contains... 27 8.2
>At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2)
identical to residues 14-204 of 20S proteasome beta
subunit PBC2 GB:AAC32069 [Arabidopsis thaliana]
Length = 204
Score = 201 bits (491), Expect = 2e-52
Identities = 91/164 (55%), Positives = 126/164 (76%)
Frame = +2
Query: 53 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 232
MSI YNG AVVAM G++C AIA+D+R G+Q QT++T+F ++ ++ L++GL GLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDV 60
Query: 233 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 412
QT+ QRL FR LY+L+E R MKP+TF++++S +LYEKRFGP+ +PVIAGL DN P+
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGD-DNKPF 119
Query: 413 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELF 544
+C MD IG +DFVVSGT SE LYG CEA+++P+++ +ELF
Sbjct: 120 ICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELF 163
>At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1)
(PRCT) almost identical to GB:AAC32069 from [Arabidopsis
thaliana], EST gb|T76747 comes from this gene; identical
to cDNA proteasome subunit prct GI:2511567
Length = 204
Score = 200 bits (489), Expect = 4e-52
Identities = 90/164 (54%), Positives = 126/164 (76%)
Frame = +2
Query: 53 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 232
MSI YNG AVVAM G++C AIA+D+R G+Q QT++T+F ++ ++ +++GL GLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDV 60
Query: 233 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 412
QT+ QRL FR LY+L+E R MKP+TF++++S +LYEKRFGPY +PVIAGL D+ P+
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGD-DDKPF 119
Query: 413 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELF 544
+C MD IG +DFVVSGT SE LYG CEA+++P+++ +ELF
Sbjct: 120 ICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELF 163
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 67.3 bits (157), Expect = 6e-12
Identities = 35/107 (32%), Positives = 54/107 (50%)
Frame = +2
Query: 71 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQR 250
NGG VA+ G D IA D R +S ++ K+ ++ + G D + + +
Sbjct: 14 NGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKV 73
Query: 251 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 391
LK R +Y+ + N+ M + +LSN LY KRF PY+ V+ GLD
Sbjct: 74 LKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 120
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 45.2 bits (102), Expect = 3e-05
Identities = 38/155 (24%), Positives = 72/155 (46%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G +A ++ V +A D R + S + K+ ++ P + + G A D Q + L
Sbjct: 57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 116
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDLI 433
+ L+EL R + S +L+N+LY R + +IAG D + P + +D
Sbjct: 117 GIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWD--ETGPGLYYVDNE 174
Query: 434 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538
G + + F V G+ S YG+ ++ ++ ++ +E
Sbjct: 175 GGRLKGDRFSV-GSGSPYAYGVLDSGYKFDMSVEE 208
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 44.8 bits (101), Expect = 4e-05
Identities = 40/168 (23%), Positives = 75/168 (44%)
Frame = +2
Query: 35 FNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLP 214
F + K + G +A + V +A D R + S + K+ ++ P + +
Sbjct: 44 FQKKAKDMLKHAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMA 103
Query: 215 GLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDP 394
G A D Q + L + L+EL R + S +L+N+LY R + +IAG D
Sbjct: 104 GGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWD- 162
Query: 395 YDNTPYVCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538
+ P + +D G + + F V G+ S YG+ ++ ++ ++ +E
Sbjct: 163 -ETGPGLYYVDNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKYDMSVEE 208
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 44.0 bits (99), Expect = 7e-05
Identities = 31/155 (20%), Positives = 65/155 (41%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G ++ + V + D R + K+ Q+ +YV G A D+Q V +
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDLI 433
++ ++ + ++ + K + ++ L Y + ++ G D Y+ + + L
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLIRMLAYNNK-NMLQTGLIVGGWDKYEGGK-IYGIPLG 129
Query: 434 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 538
G E + F + G+ S LYG + W+ N+ +E
Sbjct: 130 GTVVE-QPFAIGGSGSSYLYGFFDQAWKDNMTKEE 163
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Frame = +2
Query: 32 IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGL 211
+F +Y + + G A V ++G D V +A +K+ + Q S + K+ + + +
Sbjct: 17 LFQVEYALEAVR-KGNAAVGVRGTDTVVLAVEKKSTPKLQD-SRSARKIVSLDNHIALAC 74
Query: 212 PGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYFIEPVI 379
GL D + ++ + + + L + + + ++ L Y + G P+ + +I
Sbjct: 75 AGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLI 134
Query: 380 AGLDPYDNTPYVCNMDLIG 436
G DPY P + D G
Sbjct: 135 VGFDPYSRLPSLYQTDPSG 153
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 38.7 bits (86), Expect = 0.003
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Frame = +2
Query: 32 IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGL 211
+F +Y + + G A V ++G D V +A +K+ + Q S + K+ + + +
Sbjct: 17 LFQVEYALEAVR-KGNAAVGVRGTDTVVLAVEKKSTPKLQD-SRSARKIVSLDNHIALAC 74
Query: 212 PGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYFIEPVI 379
GL D + ++ + + + L + + + ++ L Y + G P+ + +I
Sbjct: 75 AGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLI 134
Query: 380 AGLDPYDNTPYVCNMDLIG 436
G DPY P + D G
Sbjct: 135 VGFDPYTRIPALYQTDPSG 153
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 35.1 bits (77), Expect = 0.031
Identities = 25/106 (23%), Positives = 43/106 (40%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G +V + +D V + D R N K+ M P +Y G A DT+ V +
Sbjct: 39 GTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 98
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 391
++ L+ + R + T +L L+ + G V+ G+D
Sbjct: 99 SSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQ-GHVSAALVLGGVD 143
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 35.1 bits (77), Expect = 0.031
Identities = 25/106 (23%), Positives = 43/106 (40%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G +V + +D V + D R N K+ M P +Y G A DT+ V +
Sbjct: 39 GTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 98
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 391
++ L+ + R + T +L L+ + G V+ G+D
Sbjct: 99 SSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQ-GHVSAALVLGGVD 143
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 34.7 bits (76), Expect = 0.041
Identities = 25/106 (23%), Positives = 43/106 (40%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G +V + +D V + D R N K+ M P +Y G A DT+ V +
Sbjct: 39 GTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 98
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 391
++ L+ + R + T +L L+ + G V+ G+D
Sbjct: 99 SSQLRLHRYQTGRDSRVITALTLLKKHLFSYQ-GHVSAALVLGGVD 143
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 34.7 bits (76), Expect = 0.041
Identities = 25/106 (23%), Positives = 43/106 (40%)
Frame = +2
Query: 74 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 253
G +V + +D V + D R N K+ M P +Y G A DT+ V +
Sbjct: 39 GTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 98
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 391
++ L+ + R + T +L L+ + G V+ G+D
Sbjct: 99 SSQLRLHRYQTGRDSRVITALTLLKKHLFSYQ-GHVSAALVLGGVD 143
>At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase /
homogentisicase/homogentisate oxygenase / homogentisic
acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
(Homogentisate oxygenase) (Homogentisic acid oxidase)
{Arabidopsis thaliana}; contains Pfam profile PF04209:
homogentisate 1,2-dioxygenase
Length = 461
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 323 LSNLLYEKRFGPYFIEPVIAGLDPYD-NTPYVC 418
L L Y+ FG +F IAG P D N+P +C
Sbjct: 8 LEELKYQSGFGNHFSSEAIAGALPLDQNSPLLC 40
>At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase /
homogentisicase/homogentisate oxygenase / homogentisic
acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
(Homogentisate oxygenase) (Homogentisic acid oxidase)
{Arabidopsis thaliana}; contains Pfam profile PF04209:
homogentisate 1,2-dioxygenase
Length = 461
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 323 LSNLLYEKRFGPYFIEPVIAGLDPYD-NTPYVC 418
L L Y+ FG +F IAG P D N+P +C
Sbjct: 8 LEELKYQSGFGNHFSSEAIAGALPLDQNSPLLC 40
>At3g46850.1 68416.m05085 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 736
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 144 WIPKRLSVAIATQSWPFIATTAP 76
W P + AI T +WP A+T+P
Sbjct: 547 WSPSMIQSAIMTTAWPMNASTSP 569
>At3g46840.1 68416.m05084 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 738
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 144 WIPKRLSVAIATQSWPFIATTAP 76
W P + AI T +WP A+T+P
Sbjct: 547 WSPSMIQSAIMTTAWPMNASTSP 569
>At1g78540.1 68414.m09154 transcription factor-related weak
similarity to STAT protein (GI:2230824) and STATc
protein (GI:13235235) [Dictyostelium discoideum]
Length = 638
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 505 FTHSVQLFRACSRHYKILGLIGATDQI-HITNIWSVIVRIKTSYHWFNEIW 356
F + V L+ CS H + + A + I TN W +I R HW N ++
Sbjct: 457 FANQVSLYSGCSHHSYQINM--ARELIAEGTNAWILISRNNQHVHWDNVVY 505
>At4g29790.1 68417.m04242 expressed protein
Length = 1211
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 254 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRF-GPYFIEPVIAGLDPY-DNTPYVCNMD 427
K R+NL + ++ I S+ SNL GP + L P NTP + D
Sbjct: 366 KERVNLRAVNKSNIHDESNSSSPTSNLKISASVRGPRSGSGLPPKLSPVVHNTPSPSDWD 425
Query: 428 LIGCPNEP 451
+ GC N+P
Sbjct: 426 IAGCTNKP 433
>At4g13700.1 68417.m02128 serine/threonine protein phosphatase
family protein contains Pfam domain PF00149: Ser/Thr
protein phosphatase
Length = 474
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 494 RTIVPSMFQTLQNPRAHWGNRSNPYYKHMECYRKDQDQL 378
R + P + T+ P W N + +Y+ EC R++ ++L
Sbjct: 365 RAVTPWLVATMHPP---WYNSYSSHYQEFECMRQEMEEL 400
>At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 566
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 142 DTKAFVRSDSHTVLALHRNNCTSIVR 65
D AFV D+ T++ LHR N T I++
Sbjct: 503 DFLAFVWKDTKTMITLHRLNLTEILK 528
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 73 WRCSCCDEGPRLCGYRY 123
WRC CD+ C YRY
Sbjct: 230 WRCEKCDKSVDECDYRY 246
>At2g44890.1 68415.m05588 cytochrome P450 family protein contains
Pfam PF00067: Cytochrome P450; similar to Cytochrome
P450 86A2 (SP:O23066) [Arabidopsis thaliana]
Length = 505
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 345 FSYNKFDSIAEKVLGFIILFSFSSYKF 265
FSY+ F + A K++GFI F+ S F
Sbjct: 139 FSYSVFRTSASKLVGFIAEFALSGKSF 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,065,388
Number of Sequences: 28952
Number of extensions: 284325
Number of successful extensions: 711
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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