Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I02
         (527 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   5.1  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   5.1  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   5.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 54   HLSVAFWRPPAAPRGAGD 1
            H  V +W+PPA     GD
Sbjct: 1010 HSLVVYWKPPAREEWNGD 1027



 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 45   VAFWRPPAAPRG 10
            +A W+PP  P G
Sbjct: 1218 LASWKPPVEPNG 1229


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 218 RYAVRSLRVSCRYCESLHI 274
           RY+ R    + +YC SL I
Sbjct: 286 RYSCRDCSYATKYCHSLKI 304


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
          protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 77 QFINKFMHIFLWLFGVRQQ 21
          Q +N+F    L LFG+++Q
Sbjct: 24 QILNEFKSTLLPLFGLKEQ 42


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 218 RYAVRSLRVSCRYCESLHI 274
           RY+ R    + +YC SL I
Sbjct: 44  RYSCRDCSYATKYCHSLKI 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,922
Number of Sequences: 336
Number of extensions: 1595
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)