Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I02
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0042 - 9167881-9168075,9168159-9168251,9168328-9168409,916...    30   1.0  

>11_03_0042 -
           9167881-9168075,9168159-9168251,9168328-9168409,
           9168495-9168605,9171653-9171898,9172448-9173073,
           9173402-9173422
          Length = 457

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 106 LTYKVFAFSNNSLINLCTSFCGFL 35
           + Y    F   +LINLCT FC F+
Sbjct: 397 IPYNASRFDQKTLINLCTDFCRFI 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,227,892
Number of Sequences: 37544
Number of extensions: 180943
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)