Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I02
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   1.9  
SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)            29   3.1  
SB_9085| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_7081| Best HMM Match : Extensin_2 (HMM E-Value=0.36)                27   9.6  
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               27   9.6  

>SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 25.8 bits (54), Expect(2) = 1.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 445 ARCGPVQHSTTQHST 489
           AR    QHSTTQHST
Sbjct: 141 ARHSTTQHSTTQHST 155



 Score = 22.2 bits (45), Expect(2) = 1.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 463 QHSTTQHSTA 492
           +HSTTQH TA
Sbjct: 157 RHSTTQHGTA 166


>SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 143 SVLRTSH*NLTSAHLQSFRLL*Q-FINKFMHIFLWL 39
           S+L   H    S H+   R+  Q F+N+F +IF+WL
Sbjct: 235 SILSCDHTFKVSKHIGVIRITDQMFVNQFENIFIWL 270


>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
          Length = 284

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -3

Query: 204 HVPHASYAPHVLRATRA*ETL---CPSHFT 124
           H+PH  + PH L  T   +T     PSH+T
Sbjct: 76  HIPHTLHIPHTLHTTHTLDTTHTKYPSHYT 105


>SB_9085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/72 (26%), Positives = 24/72 (33%)
 Frame = -1

Query: 269 VETRNIYN*RVESAQRNGIAXXXXXXXXXXXXCYAPHAPKRRSVLRTSH*NLTSAHLQSF 90
           VE R  Y   V      GI              Y PH P  R+  RT+   +      +F
Sbjct: 292 VELREAYEKIVRDQLHEGIIETVIDKSRGDRIFYMPHKPVARANARTTKIAIKEEDRDAF 351

Query: 89  RLL*QFINKFMH 54
           R L    +K  H
Sbjct: 352 RFLFNINDKEQH 363


>SB_7081| Best HMM Match : Extensin_2 (HMM E-Value=0.36)
          Length = 536

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 348 IGSSVVAASRLYSTLVYSR*RCSSLI 271
           +GSSVV  SR+ S++VY    CSS++
Sbjct: 6   VGSSVVYLSRVGSSVVYLSRVCSSVV 31


>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1368

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 353 ICNAQCSGRLVIFVMLRNVVVVSRCREVRTARAA 454
           +CN+  SGRLV+     ++++VS+  E  T +AA
Sbjct: 342 LCNSLASGRLVVSTQEYSIIMVSQKNE-NTVQAA 374


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 492 CCAVLCCAVL-HGSAARAVL 436
           CC VLCCAVL    + R VL
Sbjct: 331 CCVVLCCAVLCRAVSCRVVL 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,865
Number of Sequences: 59808
Number of extensions: 209185
Number of successful extensions: 569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)