Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I02
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    28   4.5  
At5g45390.1 68418.m05578 ATP-dependent Clp protease proteolytic ...    27   7.8  
At5g07660.1 68418.m00877 structural maintenance of chromosomes (...    27   7.8  

>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +2

Query: 215 CRYAVRSLRVSCRYCESLHISELHLYRE---YTRVE*SRDAATTDDPIGICNAQCSGRLV 385
           C Y + +L V+C   + +++   H+++    Y  VE +R+   +     IC  +C G+ +
Sbjct: 602 CDYCMITLHVNCLLGKDIYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC-GQTL 660

Query: 386 IFVML 400
           +F  L
Sbjct: 661 VFKWL 665


>At5g45390.1 68418.m05578 ATP-dependent Clp protease proteolytic
           subunit (ClpP4) identical to nClpP4 GI:5360593 from
           [Arabidopsis thaliana]
          Length = 292

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 18  VLLADAKKPQKDVHKFIN 71
           +LL DAK P+KD+  FIN
Sbjct: 108 LLLLDAKDPKKDIKLFIN 125


>At5g07660.1 68418.m00877 structural maintenance of chromosomes
           (SMC) family protein similar to SMC-like protein (MIM)
           [Arabidopsis thaliana] GI:5880614; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1058

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  LLADAKKPQKDVHKFINELLEKAKTL 98
           LL + +K  K + K INELLEK K +
Sbjct: 209 LLDEMEKTIKPIEKEINELLEKIKNM 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,616,237
Number of Sequences: 28952
Number of extensions: 133621
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)