Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I01
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.25 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 101 RDHRSTPPCTVCRCPTFPNSLNKLC 27
           RDH+    C  CR  T P+  +  C
Sbjct: 618 RDHKDVTQCISCRQGTVPDETHSAC 642


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 260  RPSTAGSSMVLFVHKPRRVRVLCTRN 183
            R ST    ++  VH  RRV ++ TRN
Sbjct: 1109 RASTPAPVVLEAVHASRRVLIVLTRN 1134


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = -1

Query: 212 RRVRVLCTRNISHPWVESYRGSCPPNRRSNVNSSLRQRDHRSTPPCTVCRCPT 54
           R  R +   ++++  +  +RG  PP    N       +D  ++  C    CPT
Sbjct: 214 RLTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSLVCVAQACPT 266


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = -1

Query: 212 RRVRVLCTRNISHPWVESYRGSCPPNRRSNVNSSLRQRDHRSTPPCTVCRCPT 54
           R  R +   ++++  +  +RG  PP    N       +D  ++  C    CPT
Sbjct: 214 RLTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSLVCVAQACPT 266


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 305 MKPAEQTPLTALY 343
           + P E+TPL +LY
Sbjct: 266 LPPTEKTPLISLY 278


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 293 NR*RAPALASKRPSTAGSS 237
           NR  +     +RPST GSS
Sbjct: 39  NRSESSGYCGRRPSTFGSS 57


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 293 NR*RAPALASKRPSTAGSS 237
           NR  +     +RPST GSS
Sbjct: 39  NRSESSGYCGRRPSTFGSS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,614
Number of Sequences: 438
Number of extensions: 3440
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)