Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H24
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 27 1.9
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 1.9
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 27 1.9
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.3
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 4.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 5.7
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 5.7
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 7.5
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.5
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 24 9.9
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 24 9.9
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 24 9.9
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 26.6 bits (56), Expect = 1.9
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 274 VLEHVVHSGTDSVEVRNLRNIWQVFSGECF-GTEIVVVVMEEIYFTGSRH 128
+L HV + GT+SV++ R I Q F +CF V + E +F RH
Sbjct: 111 ILFHVTYDGTESVDL--ARPIIQEFFLKCFLQNNKSVTPVYESFFNQPRH 158
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 223 LRNIWQVFSGECFGT--EIVVVVMEEIYFTGSRHFV 122
+ IW V SG+C T E + V + + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 328 LLSGGKTESLQDSDHIAGLQRRLEE 402
+L GGK+ + D+D +AG + +LEE
Sbjct: 246 ILRGGKSGTNFDADSVAGAKAKLEE 270
>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 245 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 343
G+G +F DK G A F++ DYS G
Sbjct: 61 GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93
>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 459 ENEKLVLGSHEDLMKGVSNFFQPALK 382
EN L + SH DL++ V NF A K
Sbjct: 72 ENVLLKIASHVDLVEPVENFISTAKK 97
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 80 HGATLTKTHIPGFGDKMTAAGKV 148
HG T+ HI GD MT G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 5.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 65 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 154
+N AT T T GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 7.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 211 WQVFSGECFGTEIVVV 164
W VFSG +GT I+ +
Sbjct: 87 WAVFSGNMYGTSIMAI 102
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 113 GFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPN 232
GF D +T GK L + A +LP+ P + N
Sbjct: 396 GFNDTVTNLGKKGLKDGTTNTLQIPAVRLPSLPSSPTIKN 435
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 328 LLSGGKTESLQDSDHIAGLQRRLEE 402
+L GGK D++H+A +++ LE+
Sbjct: 244 ILRGGKKGPNYDAEHVAAVRKDLEK 268
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 24.2 bits (50), Expect = 9.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 119 GDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPNFNTVGAG 253
G + KVN+F D DF+A K + P +P TV AG
Sbjct: 64 GSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLPDP-MPARTTVAAG 107
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
2|||Manual
Length = 967
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 17 LTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKM 130
+T+ + A LA N+ G + + TH+PG G +
Sbjct: 922 ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,744
Number of Sequences: 5004
Number of extensions: 43645
Number of successful extensions: 115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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