Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H24
         (464 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19130.1 68415.m02233 S-locus lectin protein kinase family pr...    29   2.0  
At2g44500.2 68415.m05532 expressed protein contains Pfam PF03138...    27   8.3  
At2g44500.1 68415.m05533 expressed protein contains Pfam PF03138...    27   8.3  
At2g23200.1 68415.m02771 protein kinase family protein contains ...    27   8.3  

>At2g19130.1 68415.m02233 S-locus lectin protein kinase family
           protein contains Pfam domains PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 828

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +1

Query: 166 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQ-DWCICD 294
           QPR QCQ  R+       S      CRC  G     Q DW + D
Sbjct: 285 QPRQQCQVYRYCGSFGICSDKSEPFCRCPQGFRPMSQKDWDLKD 328


>At2g44500.2 68415.m05532 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 422

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 430 RGLNERRIELLPTGVEVQRCGRSLEEIQFSPQ 335
           RGL+ R  + LP+ ++  RC  + + ++FSP+
Sbjct: 291 RGLDSRLSKDLPSDLQKLRCKVAFQALRFSPR 322


>At2g44500.1 68415.m05533 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 573

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 430 RGLNERRIELLPTGVEVQRCGRSLEEIQFSPQ 335
           RGL+ R  + LP+ ++  RC  + + ++FSP+
Sbjct: 291 RGLDSRLSKDLPSDLQKLRCKVAFQALRFSPR 322


>At2g23200.1 68415.m02771 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 834

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 65  DNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPNF 235
           D++  H   L  + +    D +TA   V+     NH    K+F+ +NL N P+V  F
Sbjct: 105 DSLGLHFVRLHFSVVFSRADLLTARFTVSATSGSNHHL--KSFSPQNLTNTPRVEEF 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,095,411
Number of Sequences: 28952
Number of extensions: 243034
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)