Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H23
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces... 108 4e-25
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ... 39 4e-04
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 27 1.8
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 3.1
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 26 4.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 5.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 5.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 5.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 5.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 5.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 5.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 5.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 5.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 5.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 5.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 5.4
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 7.2
>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 108 bits (260), Expect = 4e-25
Identities = 49/91 (53%), Positives = 62/91 (68%)
Frame = +1
Query: 136 WEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIP 315
W H AGPKT+ FWAPA KW LV++G+GD R E LSI Q A+L ATG IW+R+SL++ P
Sbjct: 10 WNHPAGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRP 69
Query: 316 KNYSLFAVNVFVAITSLYQISRAFRHQQSLK 408
KNY VN F+AI Q+SR +Q+ K
Sbjct: 70 KNYFNATVNFFLAIVGAVQVSRILVYQRQQK 100
>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 141
Score = 39.1 bits (87), Expect = 4e-04
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 169 FWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIPKNYSLFAVNVF 348
FW P +G+ IA + DL + +S + +L ++ RY+ ++ P+NY L + F
Sbjct: 37 FWGPLSNFGIPIAAILDLKKDPRLISGRMTGALILYSSVFMRYAWMVSPRNYLLLGCHAF 96
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 274 TGLIWSRYSLVIIPKNYSLFAVNVFVA 354
TG++WS Y++ Y+ FA + F A
Sbjct: 657 TGILWSNYAIYDPKTAYNTFAASTFTA 683
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 340 NVFVAIT-SLYQISRAFRHQQSLKNKG 417
N++ I S+Y++S A ++QQS+ KG
Sbjct: 954 NIYPVIDDSIYELSAASKYQQSINQKG 980
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 58 YEGVGRVFWVYY 23
YEGV FWVYY
Sbjct: 299 YEGVPHCFWVYY 310
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 5 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 160
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 229 PVESLSIPQSASLAATG---LIWSRYSLVIIPKNYSL 330
P S+++ + SL ++G ++W S++ PKNYSL
Sbjct: 1252 PRSSMTV-KPLSLCSSGYESIVWDLTSILFDPKNYSL 1287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,850
Number of Sequences: 5004
Number of extensions: 43539
Number of successful extensions: 137
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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