Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H23
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0848 + 21992610-21992724,21993009-21993137,21993625-219937... 108 2e-24
07_03_0223 - 15368631-15368682,15368765-15368838,15369312-153693... 106 1e-23
08_02_0303 + 15566152-15566209,15566265-15566363,15566465-155665... 101 3e-22
09_03_0104 - 12389907-12389943,12390086-12390203,12390339-123903... 66 2e-11
08_02_0653 - 19729325-19729378,19730137-19730174,19730391-197304... 50 9e-07
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 30 1.4
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 1.8
09_04_0261 + 16207565-16207825,16207935-16208087,16208191-162083... 27 7.2
05_07_0263 + 28775769-28777109 27 9.6
>07_03_0848 +
21992610-21992724,21993009-21993137,21993625-21993723,
21993833-21993885,21994157-21994230,21994382-21994433
Length = 173
Score = 108 bits (260), Expect = 2e-24
Identities = 44/92 (47%), Positives = 64/92 (69%)
Frame = +1
Query: 118 SRIRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRY 297
S+++ W H AGPKTI FWAP FKWG+ IA + D +P E +S PQ +A +G+IW+R+
Sbjct: 67 SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVVVACSGVIWARW 126
Query: 298 SLVIIPKNYSLFAVNVFVAITSLYQISRAFRH 393
+VI P N++L +VN +A+T + Q+SR RH
Sbjct: 127 GMVITPINWNLSSVNAAMAVTGVCQLSRKIRH 158
>07_03_0223 -
15368631-15368682,15368765-15368838,15369312-15369364,
15369486-15369584,15370655-15370715,15372741-15372830
Length = 142
Score = 106 bits (254), Expect = 1e-23
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +1
Query: 133 LWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVII 312
L+ + G TI FWAP FKWG+ IA + D +P E +S PQ ++A TG+IWSRYS+VI
Sbjct: 41 LYGIKTGHHTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVIT 100
Query: 313 PKNYSLFAVNVFVAITSLYQISRAFR 390
PKN++LF+VNV +A T LYQ+SR R
Sbjct: 101 PKNWNLFSVNVAMAGTGLYQLSRKIR 126
>08_02_0303 +
15566152-15566209,15566265-15566363,15566465-15566517,
15566695-15566768,15566858-15566909
Length = 111
Score = 101 bits (243), Expect = 3e-22
Identities = 43/76 (56%), Positives = 57/76 (75%)
Frame = +1
Query: 163 IFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIPKNYSLFAVN 342
+ FWAP FKWG+ IA + D +P E +S PQ ++A TG+IWSRYS+VI PKN++LF+VN
Sbjct: 20 VHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVITPKNWNLFSVN 79
Query: 343 VFVAITSLYQISRAFR 390
V +A T LYQ+SR R
Sbjct: 80 VAMAGTGLYQLSRKIR 95
>09_03_0104 -
12389907-12389943,12390086-12390203,12390339-12390393,
12391607-12391702
Length = 101
Score = 65.7 bits (153), Expect = 2e-11
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +1
Query: 151 GPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIPKNYSL 330
GPKT FW P WG V+AGL D+N+P E +S +A L + R++ ++ P+NY L
Sbjct: 14 GPKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAGL------FMRFAWMVQPRNYLL 67
Query: 331 FAVNVFVAITSLYQISRAFRHQQSLKNK 414
A + LYQ+SR R Q L+ K
Sbjct: 68 LACHASNESVQLYQMSRWARAQGYLEKK 95
>08_02_0653 -
19729325-19729378,19730137-19730174,19730391-19730445,
19731401-19731496
Length = 80
Score = 50.4 bits (115), Expect = 9e-07
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 127 RPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESLS 246
+ W GP+T FW P WG V+AGL D+N+P E +S
Sbjct: 6 KAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMIS 45
>01_01_1096 -
8659091-8659459,8660730-8661050,8661416-8661694,
8661781-8661897,8662142-8662210,8663204-8663397,
8663552-8663633
Length = 476
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 218 SPKPAITNPHLKAGAQKNIVFGPA-SCSHSG 129
SP PA NP + GAQ+N+ GP H G
Sbjct: 244 SPYPASVNPVVSGGAQQNVQAGPVYGMGHHG 274
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 277 GLIWSRYSLVIIPKNYSLFAVNVFVAITSLYQISRAFRH 393
GL+ L + N SL F+++TSLYQ+ +F H
Sbjct: 589 GLMKGLKELYLAHNNLSLQIPETFISMTSLYQLDISFNH 627
>09_04_0261 +
16207565-16207825,16207935-16208087,16208191-16208316,
16208595-16208847,16209303-16209485,16209486-16209582,
16209706-16209769,16209904-16210053,16210215-16210387,
16210497-16210536,16211170-16211223
Length = 517
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 236 STGLFKSPKPAITNPHLKAGAQKNIVFGP 150
+TGL SP+PA P G+++ VF P
Sbjct: 7 ATGLPFSPRPACCRPPSSPGSRRGFVFPP 35
>05_07_0263 + 28775769-28777109
Length = 446
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 310 IPKNYSLFAVNVFVAITSLYQISRAFR 390
IP N S+ A +V A+ SLY + +FR
Sbjct: 136 IPTNQSVVADHVLAALQSLYSLEPSFR 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,531
Number of Sequences: 37544
Number of extensions: 244973
Number of successful extensions: 627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -