Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H23
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   1.8  
SB_23258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)                 28   5.6  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)                  27   7.4  
SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77)                27   9.8  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 868

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -2

Query: 290 DQIRPVAARDADWGIDKDSTGLFKSPKPAITNPHLKAGAQKNIVFGPASCSHSGRILDGT 111
           D++   A++  +  +  + TGL   P P  TNPH  A A + +      C ++G     T
Sbjct: 113 DKVTLQASQMPEGAMFNNKTGLTWKPLPITTNPH-GATAVQAVTIALCDCKNNGTCDFDT 171

Query: 110 NLSVD 96
            LSV+
Sbjct: 172 VLSVN 176


>SB_23258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 268 AATGLIWSRYSLVIIPKNYSLFAVNVFVA-ITSLYQI-SRAFRHQQSLKNKGSK 423
           AATG  WS   + I  KN+SL + +  +A I  L+ +  +    QQ  K K +K
Sbjct: 5   AATGHAWSSIGIEICYKNHSLVSTSSLLAEIRRLHSLQQKRTTQQQKAKKKTAK 58


>SB_53942| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-08)
          Length = 435

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 259 ASLAATGLIWSRYSLVIIP--KNYSLFAVNVFVAITSLYQISRAFRHQQSLKNKGSKQ*G 432
           +SL  T L   RY  ++ P  + YS+   NV   +T+++ IS        LKNK S+  G
Sbjct: 264 SSLTLTVLAVERYRALLKPMERKYSVSMENVKFVMTAIWGISILVNIPDFLKNKYSEHYG 323


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 65  KCRKSIEPLLHRLTNLFHQEFVRY 136
           KC   +EPLL +L ++ HQ  ++Y
Sbjct: 906 KCLSQVEPLLDKLLSVSHQSTLQY 929


>SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)
          Length = 1226

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 169 FWAPAFKWGLVIAGLGDLNRPVES 240
           ++AP    GL  AGLG LNRPV++
Sbjct: 253 WFAPPKGEGLTKAGLGRLNRPVDA 276


>SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
          Length = 339

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 242 KDSTGLFKSPKPAITNPHLKAGAQKNI--VFGPASCSH 135
           +DS  LF  P+P +   + K    K +  V GPA C H
Sbjct: 197 EDSHDLFFRPEPNVNTSNPKVWNMKKMKAVLGPAVCQH 234


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 248 IDKDSTGLFKSPKPAITNPHLKAGAQKNIVFGPASCSHSGRILDG 114
           IDKD+  L K P    TNP     A+  +    + C +   I DG
Sbjct: 75  IDKDAGSLTKDPSEQDTNPESVFMAKDRVSAIQSLCEYEDSIEDG 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,159,832
Number of Sequences: 59808
Number of extensions: 290476
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)