BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_H23 (540 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U97191-3|AAB52430.2| 133|Caenorhabditis elegans Hypothetical pr... 120 7e-28 Z32683-8|CAA83622.1| 160|Caenorhabditis elegans Hypothetical pr... 48 3e-06 Z81130-5|CAB03420.1| 361|Caenorhabditis elegans Hypothetical pr... 28 3.7 Z37092-4|CAA85455.1| 890|Caenorhabditis elegans Hypothetical pr... 27 6.5 AL021469-3|CAA16290.2| 435|Caenorhabditis elegans Hypothetical ... 27 8.6 AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ... 27 8.6 >U97191-3|AAB52430.2| 133|Caenorhabditis elegans Hypothetical protein F53F10.3 protein. Length = 133 Score = 120 bits (289), Expect = 7e-28 Identities = 59/113 (52%), Positives = 76/113 (67%), Gaps = 6/113 (5%) Frame = +1 Query: 76 IYRALITSTDKFV----PSRIRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESL 243 +Y+AL + DKFV P+ +P W H AGPKT+FFWAP KW L+ AGL DL RP + L Sbjct: 7 LYQALCKAGDKFVYPVLPAFAKPAWNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKL 66 Query: 244 SIPQSASLAATGLIWSRYSLVIIPKNYSLFAVNVFVAITSLYQISRA--FRHQ 396 S+ Q+++L ATG IW+RY LVI P NY L +VN FV T L Q+ R +R+Q Sbjct: 67 SLYQNSALFATGAIWTRYCLVITPINYYLSSVNFFVMCTGLAQLCRIAHYRYQ 119 >Z32683-8|CAA83622.1| 160|Caenorhabditis elegans Hypothetical protein R07E5.13 protein. Length = 160 Score = 48.4 bits (110), Expect = 3e-06 Identities = 23/75 (30%), Positives = 38/75 (50%) Frame = +1 Query: 169 FWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIPKNYSLFAVNVF 348 FW P WGL +A LGDL + + +S P +++L ++ R++ + P+N LFA + Sbjct: 29 FWGPVANWGLPLAALGDLKKNPDMISGPMTSALLIYSSVFMRFAWHVQPRNLLLFACHFA 88 Query: 349 VAITSLYQISRAFRH 393 Q+ R H Sbjct: 89 NFSAQGAQLGRFVNH 103 >Z81130-5|CAB03420.1| 361|Caenorhabditis elegans Hypothetical protein T23G11.7a protein. Length = 361 Score = 28.3 bits (60), Expect = 3.7 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 Query: 5 ILINIKIVNPEDPSNSLIIRKCRK 76 IL N++I+NP D +S+ KC K Sbjct: 258 ILTNLQIINPIDQKSSIFTEKCWK 281 >Z37092-4|CAA85455.1| 890|Caenorhabditis elegans Hypothetical protein F44F4.4 protein. Length = 890 Score = 27.5 bits (58), Expect = 6.5 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 494 IIYLIFCLSTTLLSHVL*YPKPYCFEPLFLRLC*CLNALL 375 +I IFC TT+ S V Y + F + L + C+N + Sbjct: 271 VIMSIFCTVTTMFSAVYLYSQKATFNKVALSIIACINPFM 310 >AL021469-3|CAA16290.2| 435|Caenorhabditis elegans Hypothetical protein Y116A8B.5 protein. Length = 435 Score = 27.1 bits (57), Expect = 8.6 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 259 ASLAATGLIWSRYSLVIIPKNYSLFAVNVFVAIT 360 +S T L W RY V P Y+ A+ V +A T Sbjct: 128 SSFLMTVLSWDRYMAVCSPNAYNATALKVLLACT 161 >AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ion channel protein 30 protein. Length = 529 Score = 27.1 bits (57), Expect = 8.6 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 117 WNKFVSRCNKGSIDFRHFLI 58 W++ +SRC K S+ F FLI Sbjct: 496 WDQIISRCEKVSLSFYLFLI 515 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,435,910 Number of Sequences: 27780 Number of extensions: 226107 Number of successful extensions: 518 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 495 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 518 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1081316076 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -