Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H23
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical pr...   120   7e-28
Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical pr...    48   3e-06
Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ...    27   8.6  

>U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical
           protein F53F10.3 protein.
          Length = 133

 Score =  120 bits (289), Expect = 7e-28
 Identities = 59/113 (52%), Positives = 76/113 (67%), Gaps = 6/113 (5%)
 Frame = +1

Query: 76  IYRALITSTDKFV----PSRIRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESL 243
           +Y+AL  + DKFV    P+  +P W H AGPKT+FFWAP  KW L+ AGL DL RP + L
Sbjct: 7   LYQALCKAGDKFVYPVLPAFAKPAWNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKL 66

Query: 244 SIPQSASLAATGLIWSRYSLVIIPKNYSLFAVNVFVAITSLYQISRA--FRHQ 396
           S+ Q+++L ATG IW+RY LVI P NY L +VN FV  T L Q+ R   +R+Q
Sbjct: 67  SLYQNSALFATGAIWTRYCLVITPINYYLSSVNFFVMCTGLAQLCRIAHYRYQ 119


>Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical
           protein R07E5.13 protein.
          Length = 160

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +1

Query: 169 FWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIPKNYSLFAVNVF 348
           FW P   WGL +A LGDL +  + +S P +++L     ++ R++  + P+N  LFA +  
Sbjct: 29  FWGPVANWGLPLAALGDLKKNPDMISGPMTSALLIYSSVFMRFAWHVQPRNLLLFACHFA 88

Query: 349 VAITSLYQISRAFRH 393
                  Q+ R   H
Sbjct: 89  NFSAQGAQLGRFVNH 103


>Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical
           protein T23G11.7a protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 5   ILINIKIVNPEDPSNSLIIRKCRK 76
           IL N++I+NP D  +S+   KC K
Sbjct: 258 ILTNLQIINPIDQKSSIFTEKCWK 281


>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 494 IIYLIFCLSTTLLSHVL*YPKPYCFEPLFLRLC*CLNALL 375
           +I  IFC  TT+ S V  Y +   F  + L +  C+N  +
Sbjct: 271 VIMSIFCTVTTMFSAVYLYSQKATFNKVALSIIACINPFM 310


>AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical
           protein Y116A8B.5 protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 259 ASLAATGLIWSRYSLVIIPKNYSLFAVNVFVAIT 360
           +S   T L W RY  V  P  Y+  A+ V +A T
Sbjct: 128 SSFLMTVLSWDRYMAVCSPNAYNATALKVLLACT 161


>AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ion
           channel protein 30 protein.
          Length = 529

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 117 WNKFVSRCNKGSIDFRHFLI 58
           W++ +SRC K S+ F  FLI
Sbjct: 496 WDQIISRCEKVSLSFYLFLI 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,435,910
Number of Sequences: 27780
Number of extensions: 226107
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)