Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H23
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.28 
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   4.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 184 FKWGLVI-AGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVII 312
           F WG+++ +G+G+          P+S S    G++W+ ++++I+
Sbjct: 616 FAWGVLLNSGIGE--------GTPRSFSARVLGMVWAGFAMIIV 651


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 463 HYYPMYYNTLNL 428
           +Y P+YYN +N+
Sbjct: 330 NYKPLYYNIINI 341


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 88  GLYRFSTFSNYEGVGRVFWVYY 23
           GL++     NYE +GR    YY
Sbjct: 501 GLHKNKPDMNYETMGRALRYYY 522


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 79  YRALITSTDKFVPSRIRPLWEHEAGPKTIF 168
           +R+ I ++DK   SRI+   +    P T F
Sbjct: 662 FRSSIKASDKLKDSRIKTTEKLSTDPNTHF 691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,481
Number of Sequences: 438
Number of extensions: 3150
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)