Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H23
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05590.1 68417.m00864 expressed protein contains Pfam domain,...   123   7e-29
At4g22310.1 68417.m03226 expressed protein contains Pfam domain,...   122   1e-28
At4g14695.1 68417.m02258 expressed protein contains Pfam domain,...   112   1e-25
At5g20090.1 68418.m02392 expressed protein contains Pfam domain,...    72   2e-13
At1g06840.1 68414.m00729 leucine-rich repeat transmembrane prote...    28   4.6  
At4g08470.1 68417.m01398 mitogen-activated protein kinase, putat...    27   6.1  
At1g18670.1 68414.m02330 protein kinase family protein contains ...    27   8.0  

>At4g05590.1 68417.m00864 expressed protein contains Pfam domain,
           PF03650: Uncharacterized protein family (UPF0041)
          Length = 108

 Score =  123 bits (297), Expect = 7e-29
 Identities = 49/92 (53%), Positives = 69/92 (75%)
 Frame = +1

Query: 118 SRIRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRY 297
           S+++ LW H AGPKTI FWAP FKWG+ IA + D  +P E+LS PQ   +  TGL+WSRY
Sbjct: 4   SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPETLSYPQQIVITGTGLVWSRY 63

Query: 298 SLVIIPKNYSLFAVNVFVAITSLYQISRAFRH 393
           S VI PKN++LF+V++ +A+T +YQ++R  +H
Sbjct: 64  STVITPKNWNLFSVSLGMAVTGIYQLTRKIKH 95


>At4g22310.1 68417.m03226 expressed protein contains Pfam domain,
           PF03650: Uncharacterized protein family (UPF0041)
          Length = 108

 Score =  122 bits (295), Expect = 1e-28
 Identities = 50/92 (54%), Positives = 69/92 (75%)
 Frame = +1

Query: 118 SRIRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRY 297
           S+++ +W H AGPKTI FWAP FKWG+ IA + D  +P E LS PQ  ++  TG+IWSRY
Sbjct: 4   SKLQAIWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIAVTCTGVIWSRY 63

Query: 298 SLVIIPKNYSLFAVNVFVAITSLYQISRAFRH 393
           S+VI PKN++LF+VNV +A T +YQ++R  +H
Sbjct: 64  SMVINPKNWNLFSVNVAMAGTGIYQLARKIKH 95


>At4g14695.1 68417.m02258 expressed protein contains Pfam domain,
           PF03650: Uncharacterized protein family (UPF0041)
          Length = 109

 Score =  112 bits (270), Expect = 1e-25
 Identities = 45/92 (48%), Positives = 66/92 (71%)
 Frame = +1

Query: 118 SRIRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRY 297
           S+++ LW H AGPKTI FWAP FKWG+ IA + D  +P E++S  Q  ++  TG+IW R 
Sbjct: 4   SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPENISYLQQIAVTCTGMIWCRC 63

Query: 298 SLVIIPKNYSLFAVNVFVAITSLYQISRAFRH 393
           S +I PKN++LF+VNV +A T +YQ++R  ++
Sbjct: 64  STIITPKNWNLFSVNVAMAATGIYQLTRKIKY 95


>At5g20090.1 68418.m02392 expressed protein contains Pfam domain,
           PF03650: Uncharacterized protein family (UPF0041)
          Length = 110

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 35/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 118 SRIRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRY 297
           SR +       GPKT  FW P   WG V AGL D+ +P E +S   S+++     ++ R+
Sbjct: 4   SRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRF 63

Query: 298 SLVIIPKNYSLFAVNVFVAITSLYQISRAFRHQQSLKNKGSKQ 426
           + ++ P+NY L A +       LYQ+SR  R Q  L +K  ++
Sbjct: 64  AWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEEE 106


>At1g06840.1 68414.m00729 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GB:BAA11869  GI:1389566 from [Arabidopsis thaliana]
          Length = 939

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 437 PKPYCFEPLFLRLC*CLNALLI*YKL 360
           P PY F P  LR C C   LL+ Y+L
Sbjct: 405 PPPYEFSPEPLRRCFCAAPLLVGYRL 430


>At4g08470.1 68417.m01398 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 560

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 62  RKCRKSIEPLLHRLTNLFHQEFVRY-GSMKQVQKQY 166
           ++C + +E  +  L+ L HQ  VRY G+ K V K Y
Sbjct: 343 QECIQQLEGEIALLSQLQHQNIVRYRGTAKDVSKLY 378


>At1g18670.1 68414.m02330 protein kinase family protein contains
           Protein kinases ATP-binding region signature,
           PROSITE:PS00107 and Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 662

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 248 IDKDSTGLFKSPKPAITNPHLKAGAQKNIVFGPASCSHSG---RILDGTNLSVD 96
           ++ D TGL  SP    T P +K    K ++ G   C   G   R + G+NL V+
Sbjct: 212 MEHDLTGLLSSPDIDFTTPQIKC-YMKQLLSGLDHCHARGVMHRDIKGSNLLVN 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,710,218
Number of Sequences: 28952
Number of extensions: 212410
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)