Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H21
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    29   0.34 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.4  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   3.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.2  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   5.5  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   7.3  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   7.3  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   7.3  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   9.6  

>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 205 LVEIMANDISH*SRQTLRTFQWSAYLPYAFRVDGFRRSIISHQH 336
           +V + A   S+   + +R + W  Y   AF V  FRR   SH H
Sbjct: 1   MVGLPARGKSYIVNKLVRYYNWLQYNCKAFNVGNFRRKHASHSH 44


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 417 HAPSIYAYVIFDIFFFFENTHCRALNIML 331
           H  +I A+  +  FFFF  +HCR  +I +
Sbjct: 67  HTFTIEAFFYWFFFFFFFFSHCRRFHIAI 95


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +1

Query: 223 NDISH*SRQTLRTFQWSAYLPYAFRVDGFRRSIISHQHYI*STTVGIFEKKKNVKYDVSI 402
           NDI + S     T   +A+ P    +D FR    SHQHY+      I+    N   D + 
Sbjct: 372 NDIDYMSEFRTFTVNSTAFPPNQ-TLDFFRSLDESHQHYVPVLDPAIYAANPNKSADRTY 430

Query: 403 Y 405
           Y
Sbjct: 431 Y 431


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 210 NKSYVKQEKRNYATIKRYSN 151
           N + +KQ ++N A+I+RY N
Sbjct: 363 NSAIIKQRQQNVASIQRYGN 382


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 465 ILVILDPVVRNNRLSIHAPSIYAYVIFDIFFFFENTHCRAL 343
           I+ +LD + + + +      I  YV +D+F F    HC AL
Sbjct: 303 IIKVLDIIYKRHTIL----QIIEYVPYDLFTFITKGHCSAL 339


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = +2

Query: 293 FASTDSVGR*YHI-----NIIFKARQWVFSKKKKMSNMT*AYIEGACMLSLLF-LTTGSN 454
           + ST  VG  Y +     N+   AR W F + +   N    +      L LLF LT   +
Sbjct: 304 YISTGLVGPWYAVPATGTNMFLIARAWKFYRNRNYQNARSLFFASLLHLPLLFTLTLACH 363

Query: 455 MTKI 466
           M K+
Sbjct: 364 MIKV 367


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 154 RVSFYCCVISLFLFYIRL 207
           R+SFY C  S+FL +  +
Sbjct: 90  RISFYICYFSIFLLFFAI 107


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 241 SRQTLRTFQWSAYLPYAFRVDGFRRSIISH 330
           S +T +  QWS+ + Y F +  F+  +I H
Sbjct: 171 SMETGKEVQWSSEMNYHFLLSKFQSRLIEH 200


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 39  KDTISYRLILKSISDNSFLLTFGLTVSHDVCLCFVHINSSIFLLLRNF 182
           ++TISY + L+ +   S      L ++  V   + HI+SS+FL L  F
Sbjct: 332 QNTISYPIALQCLIYCSNPYFKRLELALKVSCAYGHIDSSLFLSLPRF 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,874
Number of Sequences: 5004
Number of extensions: 49072
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)