Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H21
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     27   7.4  
02_03_0086 - 15069265-15069432,15069641-15069698,15070023-15070048     27   7.4  

>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 271 SAYLPYAFRVDGFRRSIISHQHYI*STTVGIFEKKKNVKYDVSIY-RGGV 417
           S Y+P   R    R  +I H   +    +G+FEK+  VK    IY R GV
Sbjct: 796 SKYVP-RIRAQPHRCEVIQHLGDMCKELIGVFEKRNRVKPQRIIYFRDGV 844


>02_03_0086 - 15069265-15069432,15069641-15069698,15070023-15070048
          Length = 83

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 39  KDTISYRLILKSISDNSFLLTFGLTVSHDVCLCFVHINS 155
           KD ISYR +L  I+  SFL +  +    D+ L   H+ S
Sbjct: 32  KDRISYRYVLSLINHPSFLRSTDMIHMADLTLVKNHLKS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,143
Number of Sequences: 37544
Number of extensions: 244828
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)