Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H21
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89)                   30   1.4  
SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)                   28   5.7  

>SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89)
          Length = 655

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/45 (24%), Positives = 27/45 (60%)
 Frame = -1

Query: 501 YDQIFHKCYQSKILVILDPVVRNNRLSIHAPSIYAYVIFDIFFFF 367
           YDQ  ++CY   + ++++PVV++ R+ +  P ++  +   ++  F
Sbjct: 370 YDQQIYQCYIDAVNLVMEPVVQSARM-LQTPKVWNNISPQLYVTF 413


>SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 340 YNVDVILSTYGIRRREMRMANKL 272
           YN  +I+ST+G  R  +R+AN L
Sbjct: 400 YNATIIMSTFGDAREALRLANDL 422


>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
          Length = 634

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 419 YTPPLYMLTSYLTFFFFSKIPTVV 348
           Y P  Y +T  LTF  F KIPT V
Sbjct: 190 YAPLSYSVTCSLTFLVFCKIPTNV 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,732
Number of Sequences: 59808
Number of extensions: 327873
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)