Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H21
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024814-2|AAK68521.2|  259|Caenorhabditis elegans Hypothetical ...    30   1.2  
U00043-11|AAN65290.1|  641|Caenorhabditis elegans Hypothetical p...    28   5.0  
U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical p...    28   5.0  
U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    27   8.8  
U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    27   8.8  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AC024814-2|AAK68521.2|  259|Caenorhabditis elegans Hypothetical
           protein Y54F10AR.1 protein.
          Length = 259

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -1

Query: 540 NGPFSNTLFLKSEYD--QIFHKCY--QSKILVILDPVVRNNRLSIHAPSIYAY 394
           N PF N   L  ++   Q  HK Y  QSK+  IL  +     L+IH  +  AY
Sbjct: 33  NEPFDNVPLLNGQFTKGQYTHKIYHLQSKVPAILRKIAPKGSLAIHEEAWNAY 85


>U00043-11|AAN65290.1|  641|Caenorhabditis elegans Hypothetical
           protein T26A5.2b protein.
          Length = 641

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 444 VVRNNRLSIHAPSIYAYVIFDIFFFFENTHCRALNIMLM*YYRPTESVDAKC 289
           +VRN++        + YV FD+  F E+ HC +L        +P E+V   C
Sbjct: 315 LVRNSK-DFELSKAFYYVDFDLAHFVESDHCYSLLNAKSVNGKPDETVVKSC 365


>U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical
           protein T26A5.2a protein.
          Length = 779

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 444 VVRNNRLSIHAPSIYAYVIFDIFFFFENTHCRALNIMLM*YYRPTESVDAKC 289
           +VRN++        + YV FD+  F E+ HC +L        +P E+V   C
Sbjct: 453 LVRNSK-DFELSKAFYYVDFDLAHFVESDHCYSLLNAKSVNGKPDETVVKSC 503


>U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical
           protein F31E8.1 protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 63  ILKSISDNSFLLTFGLTVSHDVCLCFVHINSSIFL-LLRNFSFLVLHKTC*N 215
           ++ +  DN++       +S  +CL + H N   F+  L + SF + + T  N
Sbjct: 133 VIATSGDNAYHPDASFVISTRMCLFYTHSNPDFFIFFLFSISFFIFYATSSN 184


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 209 LKLWPMIFHINHVRLSELFSGQLICHTHFASTDSVGR*YHINIIFKARQWVFSKKKKMSN 388
           + LW   F+ NH  +        + +T   ST   G    ++ I    QW+  K+ KM+N
Sbjct: 153 VNLWQEPFN-NHAAIMMSHLNSNLLNTIILSTPIPGTHLKLDAIVTLEQWLNGKEVKMNN 211

Query: 389 MT 394
           ++
Sbjct: 212 LS 213


>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 115 SVMMCVCVLFTLIRVSFYCCVISLFLFYIRLVEIMANDISH*SRQTLRTFQWSAYLPYAF 294
           ++  C+ ++FT++ V FY   ++  + + + V   AN +    R  +RT ++   L   F
Sbjct: 172 AIWYCIMMIFTILTVLFYS--VAFVVLHYKQVHKNAN-VQFLERMCMRTLKYLIVLFVVF 228

Query: 295 R 297
           R
Sbjct: 229 R 229


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 145 TLIRVSFYCCVISLFLFYIRLVEIMANDIS 234
           T++R+ FYC ++ LF+F + +  I A +IS
Sbjct: 500 TMLRLLFYCSLLYLFIF-VTVQMIPAREIS 528


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 209 LKLWPMIFHINHVRLSELFSGQLICHTHFASTDSVGR*YHINIIFKARQWVFSKKKKMSN 388
           + LW   F+ NH  +        + +T   ST   G    ++ I    QW+  K+ KM+N
Sbjct: 153 VNLWQEPFN-NHAAIMMSHLNSNLLNTIILSTPIPGTHLKLDAIVTLEQWLNGKEVKMNN 211

Query: 389 MT 394
           ++
Sbjct: 212 LS 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,522,824
Number of Sequences: 27780
Number of extensions: 265296
Number of successful extensions: 728
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)