Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H21
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein / b...    29   2.7  
At5g65460.1 68418.m08232 kinesin motor protein-related contains ...    28   4.7  
At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein / a...    27   6.2  
At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase / fructos...    27   8.2  

>At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein /
           beta-glucosidase, putative (BG1) contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to GI:6651430
           from [Arabidopsis thaliana]
          Length = 528

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 373 FFRKYPLSCFKYNVDVILSTYGIRRREMRMANKLTTEKF 257
           F +K+P  C  +N DV +  Y   + ++++   L T+ F
Sbjct: 76  FTKKFPHRCENHNADVAVDFYHRYKEDIQLMKDLNTDAF 114


>At5g65460.1 68418.m08232 kinesin motor protein-related contains
           similarity to kinesin heavy chain
          Length = 1281

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +3

Query: 21  ISIY-CYKDTISYRLILKSISDNSFLLTFGLTV---SHDVCLCFVHINSSIFLLLRNFSF 188
           +SI+ CY +TI+   ++  +S      + GLTV   + D     +H+ +SI  L    S 
Sbjct: 352 VSIHICYSNTITRENVISKLSLVDLAGSEGLTVEDDNGDHVTDLLHVTNSISALGDVLSS 411

Query: 189 LVLHKTC*NYGQ*YFTLITSDSQNFSVVSLFAIRI 293
           L   +    Y   + T I +DS   S  +L  + I
Sbjct: 412 LTSKRDTIPYENSFLTRILADSLGGSSKTLMIVNI 446


>At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein /
           anther-specific protein ATA27 contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to
           anther-specific protein ATA27 (GI:2746341)  [Arabidopsis
           thaliana]
          Length = 535

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 373 FFRKYPLSCFKYNVDVILSTYGIRRREMRMANKLTTEKF 257
           + +K+P  C  +N DV +  Y   + ++++   L T+ F
Sbjct: 74  YTKKFPHKCNYHNADVAVDFYHRYKEDIKLMKNLNTDGF 112


>At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase /
           fructose-2,6-bisphosphatase (F2KP) identical to
           fructose-6-phosphate
           2-kinase/fructose-2,6-bisphosphatase (F2KP) [Arabidopsis
           thaliana] GI:13096098
          Length = 744

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -1

Query: 507 SEYDQIFHKCYQSKILVILDPVVRNNRLSIHAPSIYAYVIFDIFFFFENTHCRALNIMLM 328
           + Y++++    +   + ++D +V  N   I   +I  Y+   I FF  NTH     I+L 
Sbjct: 498 ANYEKVYEPVEEGSYIKMID-MVSGNGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLT 556

Query: 327 *YYRPTESVD 298
              R  ES+D
Sbjct: 557 ---RHGESMD 563


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,337,151
Number of Sequences: 28952
Number of extensions: 227286
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)