Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H20
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 33 0.14
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 31 0.58
At5g60920.1 68418.m07642 phytochelatin synthetase, putative / CO... 31 0.77
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f... 31 0.77
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 30 1.3
At3g17750.1 68416.m02265 protein kinase family protein contains ... 30 1.3
At5g55960.1 68418.m06979 expressed protein 29 3.1
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 29 3.1
At3g32904.1 68416.m04164 hypothetical protein 29 3.1
At1g73460.1 68414.m08504 protein kinase family protein contains ... 29 3.1
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc... 29 3.1
At5g56050.1 68418.m06993 hypothetical protein 28 5.4
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi... 28 5.4
At3g62810.1 68416.m07057 complex 1 family protein / LVR family p... 27 7.2
At5g42620.1 68418.m05188 expressed protein 27 9.5
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 27 9.5
>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 419
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 139 KIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVGIPCYCTLEYAPVCGSNGK 318
K+Y+ + S G+ YEN C F C+ + + T C + + C P+ S K
Sbjct: 83 KVYTHIFTSSGRIYENTCHF-CQ---SKLEFLFARCTICNLNVDIECLFALPPLTISEPK 138
Query: 319 TYANKCSL 342
+ + SL
Sbjct: 139 HHKHSLSL 146
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 97 YSVTALPPPLCICGKIYSPVCGSDG-KTYENPCEFYC 204
Y + PP L +Y+ C DG + + + CEF+C
Sbjct: 336 YEMLRFPPSLLAATSVYTAQCTLDGSRKWNSTCEFHC 372
>At5g60920.1 68418.m07642 phytochelatin synthetase, putative / COBRA
cell expansion protein COB, putative similar to
phytochelatin synthetase GI:29570314; similar to
GB:AAK56072; identified in Roudier, et al, Plant Phys.
(2002) 130:538-548 (PMID:12376623); identical to cDNA
putative phytochelatin synthetase GI:3559804; contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 456
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 245 TPH-ARWASPATVPWN-MPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARELNWRV 418
TPH A SP T +PP V T + P VHW+ K+ Y+ W + N+R+
Sbjct: 270 TPHLASVVSPPTKKGTVLPPLVQCTRHMCPIRVHWHV-KQNYKE-YWRVKITITNFNYRL 327
>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 144
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 361 IPSLKMEHD---GE-CQGAKLASLHPCICTREKDPVCGSDGVTY 480
+PS K+ + GE C+G + P C R DPVCG D VTY
Sbjct: 47 LPSEKINGEKNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTY 89
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 151 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 264
PVCG D TY C D + +VK AC+VG
Sbjct: 80 PVCGEDSVTYWCGC-----ADALCHGVRVVKQGACDVG 112
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Frame = +1
Query: 124 LCICGKIYSPVCGSDGKTYENPCEFYCEKDKT----HSNMTIVKNTACE-----VGIPCY 276
LC CGK P + + C CE+ + H + + C V C+
Sbjct: 165 LCYCGKEEDPPADNPW-ILPHSCGEVCERPLSNNCGHCCLLLCHPGPCASCPKLVKAKCF 223
Query: 277 CT-LEYAPVCGSNGKTYANKCSLECTQKIIPSLKMEHDGECQGAKLASLHPCICTREKD 450
C +E CG + + C I ++ HDGEC + +++ C C + K+
Sbjct: 224 CGGVEDVRRCGHKQFSCGDVCERVLDCNIHNCREICHDGECPPCRERAVYKCSCGKVKE 282
>At3g17750.1 68416.m02265 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1138
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 172 YHLTRRRDYRFFRKYITAVAELLPSIL 92
YHL R DY +FR+++ V ELL + L
Sbjct: 887 YHLLRLYDYFYFREHLLIVCELLKANL 913
>At5g55960.1 68418.m06979 expressed protein
Length = 648
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 346 IPVNICWRKFFR-*SHRRGHIPRYSSRGCPPR 254
IP N+ W++ FR S R+ P SS PPR
Sbjct: 14 IPTNLAWQEMFRSASSRKPQDPPSSSSSSPPR 45
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 448 DPVCGSDGVTY 480
DPVCG+DGVTY
Sbjct: 52 DPVCGTDGVTY 62
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 151 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 264
PVCG+DG TY C D +VK AC+ G
Sbjct: 53 PVCGTDGVTYWCGC-----PDAACHGARVVKKGACDTG 85
>At3g32904.1 68416.m04164 hypothetical protein
Length = 330
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 257 RWASPATVP-WNMPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARELN 409
+W +P T P WN P +V + PT W P + +W+ A +L+
Sbjct: 276 QWGTPPTAPQWNSPSNVPQWT-IPPTTPQWGTPSSMP---QWSSSPTAPQLS 323
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 172 YHLTRRRDYRFFRKYITAVAELLPSIL 92
YHL R DY ++R+++ V ELL + L
Sbjct: 918 YHLLRLYDYFYYREHLLIVCELLKANL 944
>At1g73450.1 68414.m08503 protein kinase, putative similar to
nuclear serine/threonine protein kinase GI:3582644 from
[Rattus norvegicus]
Length = 1152
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 172 YHLTRRRDYRFFRKYITAVAELLPSIL 92
YHL R DY ++R+++ V ELL + L
Sbjct: 901 YHLLRLYDYFYYREHLLIVCELLKANL 927
>At5g56050.1 68418.m06993 hypothetical protein
Length = 283
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 242 KTPHARWASPATVPWNMPP-SVALTEKLTP 328
+TP ++W SP PW P S T TP
Sbjct: 21 ETPSSKWYSPIYTPWRTTPRSTQSTPTTTP 50
>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 408
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +1
Query: 175 TYENPCEFYCEKDKTHSNMTIVK---NTACEVGIPCYCTLEYAPVCGSNGKTYANKCSLE 345
TY + +C +D + K N C+ CY TL Y G + +T + C
Sbjct: 294 TYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKES 353
Query: 346 CTQKIIPSLKM 378
+ +PS +
Sbjct: 354 MEKNWVPSFSI 364
>At3g62810.1 68416.m07057 complex 1 family protein / LVR family
protein contains Pfam PF05347: Complex 1 protein (LYR
family)
Length = 106
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 425 RVYARARKIQFAGATASLTAICAS*KCAYCPNQA*ASNTPVLAIITECR 571
R RA K FAG T L A + + + N+ ASN+ + ++ E R
Sbjct: 11 RALLRATKKSFAGDTEMLKASASEIRKKFEENRLVASNSDITRLLEEAR 59
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 298 VCGSNGKTYANKC--SLECTQKIIPSLKMEHDGECQGA 405
VC S ++Y C SL+C+ + + S E D EC G+
Sbjct: 786 VCHSACQSYNMACGASLDCSDQTLFSTAEEGDAECTGS 823
>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
contains similarity to SKP1 interacting partner 2
GI:10716949 from [Arabidopsis thaliana]; contains Pfam
PF00646: F-box domain
Length = 554
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 442 EKDPVCGSDGVTYSNLCLLKMRLLSKPSLSIEHTGPCDNNRV*AVGN 582
E+ +CGSD V + LC + + L+ L I++ P ++ + A+GN
Sbjct: 398 ERLALCGSDTVGDTELCCIAEKCLALRKLCIKNC-PITDDGIKALGN 443
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,361,790
Number of Sequences: 28952
Number of extensions: 325112
Number of successful extensions: 819
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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