Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H19
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55210.1 68418.m06882 expressed protein similar to unknown pr...    30   1.3  
At2g36670.2 68415.m04498 aspartyl protease family protein contai...    30   1.3  
At2g05645.1 68415.m00604 hypothetical protein                          30   1.3  
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    29   1.7  
At3g02740.1 68416.m00266 aspartyl protease family protein contai...    29   1.7  
At1g08210.1 68414.m00907 aspartyl protease family protein contai...    29   1.7  
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si...    28   4.0  
At1g48690.1 68414.m05449 auxin-responsive GH3 family protein sim...    28   4.0  
At4g21240.1 68417.m03071 F-box family protein contains F-box dom...    28   5.3  
At1g72800.1 68414.m08416 nuM1-related contains similarity with n...    28   5.3  
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...    28   5.3  
At5g22850.1 68418.m02671 aspartyl protease family protein contai...    27   7.0  
At3g28850.1 68416.m03599 glutaredoxin family protein                   27   7.0  
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ...    27   7.0  
At3g01200.1 68416.m00026 expressed protein contains Pfam domain ...    27   9.2  

>At5g55210.1 68418.m06882 expressed protein similar to unknown
           protein (pir||T04913)
          Length = 168

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 89  INSTLVRTTSSAARSRCTAL-SNRDRGLKTYWKKVSTQLEQVSRASRVGG 235
           + S L RT+S  +    TA+ S R R  K  W +VST    V RAS+  G
Sbjct: 4   VGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNG 53


>At2g36670.2 68415.m04498 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 507

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 392 RQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPP 288
           RQ+ +  +VD  + G + P L G+  T +  G PP
Sbjct: 76  RQSSVGGVVDFPVQGSSDPYLVGLYFTKVKLGSPP 110


>At2g05645.1 68415.m00604 hypothetical protein
          Length = 204

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 233 HQLSMLLKPVPVVSKPFSNMFLVHG 159
           H+  +LL P P++S P S+MF+ HG
Sbjct: 130 HRPFVLLMPRPLLSSPHSHMFVEHG 154


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = -3

Query: 368 VDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSK 189
           VD+S +  T P+ + +++ N    +      GN+ LCGKP ++L    S L  P P +S+
Sbjct: 249 VDLSFNNLTGPIPSSLSLLN----QKAESFSGNQELCGKPLKILCSIPSTLSNP-PNISE 303

Query: 188 PFS 180
             S
Sbjct: 304 TTS 306


>At3g02740.1 68416.m00266 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 488

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 419 GIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 285
           G +  H +HR + L   +DI + G + P   G+    I  G P R
Sbjct: 52  GALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKIGLGTPSR 96


>At1g08210.1 68414.m00907 aspartyl protease family protein contains
           Pfam profile PF00026: Eukaryotic aspartyl protease;
           similar to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) {Nicotiana tabacum}
          Length = 492

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 410 SKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 285
           ++H    Q+ +  +V+  +DG + P L G+  T +  G PPR
Sbjct: 54  ARHGRLLQSPVGGVVNFPVDGASDPFLVGLYYTKVKLGTPPR 95


>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
           similarity to unusual floral organs (UFO) GI:4376159
           from [Arabidopsis thaliana]
          Length = 403

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 2   LLVPNTIAWAAS*ASMTNALTCSKSIASSINSTLVRTTSSAARS 133
           L  PN I+W       + +LTC+ S+ SS N  L  + S ++ S
Sbjct: 112 LFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVS 155


>At1g48690.1 68414.m05449 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 190

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 212 KPVPVVSKPFSNMFLVHGLCSIT 144
           K  PV +K F NM  +H LCS T
Sbjct: 99  KIFPVNNKYFENMIFIHALCSST 121


>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 417

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 336 RYGFTIN*YVYYEGEIRLSVECMF 407
           R G  IN +VYYE +IR  V+ +F
Sbjct: 227 RVGTCINGHVYYEAQIRFKVDDIF 250


>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
           GI:1279563 from [Medicago sativa]
          Length = 335

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -2

Query: 318 DDEHLERQTAEGSER*QKPVRKAKATLIPP-TLDALETCS---SCVETFFQYVFSPRSLF 151
           DD +++  + + S   ++PV K  A+   P T D+L +     +  ++ F   F P SLF
Sbjct: 109 DDSYMDTSSEDESSSAEEPVNKPAASAAKPATKDSLFSAGFKPAAKDSLFSAGFKPDSLF 168

Query: 150 DNAVHLERAADDVVLTS 100
             +   E AA D + ++
Sbjct: 169 --SAGFEPAAKDSLFSA 183


>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 391 RWSVCFDTMPLGFPFDREIYMPTFFTNN 474
           +W+V  DT P+G  FD  I    +F  N
Sbjct: 163 QWAVVGDTFPVGCAFDESIVHHKYFKEN 190


>At5g22850.1 68418.m02671 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 493

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 380 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 285
           L  ++D  +DG   P + G+  T +  G PPR
Sbjct: 61  LGGVIDFPVDGTFDPFVVGLYYTKLRLGTPPR 92


>At3g28850.1 68416.m03599 glutaredoxin family protein 
          Length = 428

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 417 HCVETYTPPTSVSRLHSRH 361
           HC   Y+PP  V R HS H
Sbjct: 14  HCRRGYSPPVDVQRSHSVH 32


>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 299 GKPPRVPRGNRSLCGKP--RRLLYH 231
           GKPP    GN SLCGK     + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210


>At3g01200.1 68416.m00026 expressed protein contains Pfam domain
           PF03618: Domain of unknown function (DUF299)
          Length = 377

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 28  GRLMSINDKRLDMLEIDSFVYKLDTG--KNNIVRSSLEMHGVIE--QRPWTKNILEKGFD 195
           GR+ ++ND     +E   F  K D G    N+ ++ + + GV    + P +  I +KG+ 
Sbjct: 202 GRVKTLNDAYFKRIEAIEFTIKQDDGTLPENLSKADIVLVGVSRTGKTPLSTYIAQKGYK 261

Query: 196 TTGTGF 213
                F
Sbjct: 262 VANVPF 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,777,316
Number of Sequences: 28952
Number of extensions: 270001
Number of successful extensions: 721
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)