Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H18
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 29 0.37
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.1
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 1.5
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 2.0
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 3.5
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.6
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.1
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 8.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 8.0
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 8.0
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 29.5 bits (63), Expect = 0.37
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 207 LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEI 386
L IF+K +++ ++ FES K+ FH ++ W++ D EEV D+QR +
Sbjct: 247 LQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDF--EEVEGDFQRICHL 304
Query: 387 VARHVLGAA 413
R ++ A
Sbjct: 305 YERCLITCA 313
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 201 RFLDIFEKTFVQSLQKGKFESYG-KKID-FHDEKA 299
+FL+I+ +T + L G E G KK++ +HD KA
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKA 640
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.5
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +1
Query: 220 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL-- 393
K+L + K + + + +T+ R+ L +T + +C K+ + I DL+ SL
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTC 257
Query: 394 -AMCSVQHLNHSTSTPSCPVRLTFT 465
A +Q + TS+ S PV L T
Sbjct: 258 FASDILQTVPEYTSSQSSPVLLPAT 282
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 120 LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 212
L+ SYY PF DN ++ V YEA + +
Sbjct: 20 LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 418 NHSTSTPSCPV-RLTFTKTALREPAFYQLYDRIVGF 522
N STP+ V R +T R+ FYQ+Y+ I F
Sbjct: 338 NFGASTPASRVSRNPYTAAQPRKHTFYQMYENIEKF 373
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 66 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 158
G P+ +Y P + YYP +Y P +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 6.1
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +3
Query: 9 NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 179
NFY + YF T G+ S+P F + YP S Y P P ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 219 EKTFVQSLQKGKFESYGKKIDFHDEKAIN 305
EKT V+S+ K + + G DFH E A N
Sbjct: 12 EKTHVESIVKFEDSNRGTITDFHIETANN 40
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 8.0
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = +1
Query: 244 RKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNH 423
RK R+ ++ + + L + IC Q I L + C L H
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKH 1122
Query: 424 STSTPSCPVRL 456
S+S P C +L
Sbjct: 1123 SSSCPMCKTKL 1133
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 8.0
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 158 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 30
RP + ++V SH+ I+++L + RVP YG KT ++ C
Sbjct: 30 RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,496
Number of Sequences: 5004
Number of extensions: 53706
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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