Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H18
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.73 
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   0.97 
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.7  
At3g62160.1 68416.m06984 transferase family protein low similari...    29   2.2  
At1g09280.2 68414.m01038 expressed protein contains Pfam profile...    29   3.0  
At1g09280.1 68414.m01037 expressed protein contains Pfam profile...    29   3.0  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   3.9  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    27   9.0  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   9.0  

>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 119 GIVTSLNRRVPREFRYGTQAVCKT 48
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 268 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 411
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 192 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 311
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 116 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 27
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At1g09280.2 68414.m01038 expressed protein contains Pfam profile:
           PF03959 domain of unknown function (DUF341)
          Length = 575

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +1

Query: 337 ICMKKKLQRIINDLMKLS-----LAMCSVQHLNHSTSTPSCPVRLTFTKTALREPAFYQL 501
           +C KK    + +D  K S     +A C    L + T T      LT+ KTA  E      
Sbjct: 402 VCNKKFAWLVSSDFDKPSETGWTVAQCQFDPLQYQTQTEGFDKSLTYLKTAFEEKG---P 458

Query: 502 YDRIVGFTINA 534
           +D I+GF+  A
Sbjct: 459 FDGILGFSQGA 469


>At1g09280.1 68414.m01037 expressed protein contains Pfam profile:
           PF03959 domain of unknown function (DUF341)
          Length = 581

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +1

Query: 337 ICMKKKLQRIINDLMKLS-----LAMCSVQHLNHSTSTPSCPVRLTFTKTALREPAFYQL 501
           +C KK    + +D  K S     +A C    L + T T      LT+ KTA  E      
Sbjct: 408 VCNKKFAWLVSSDFDKPSETGWTVAQCQFDPLQYQTQTEGFDKSLTYLKTAFEEKG---P 464

Query: 502 YDRIVGFTINA 534
           +D I+GF+  A
Sbjct: 465 FDGILGFSQGA 475


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +3

Query: 270 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 368
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 57   NGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFE 221
            +GL +IP  +W +  +TG    +   + P     D      V NYE    L+ F+
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFD 1058


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 202 GSWTFLKRLSYSPY 243
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,760,893
Number of Sequences: 28952
Number of extensions: 265835
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)