Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H16
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47820.1 68415.m05968 expressed protein                             31   0.81 
At1g15460.1 68414.m01858 anion exchange family protein member of...    29   1.9  
At3g02620.1 68416.m00253 acyl-[acyl-carrier-protein] desaturase,...    29   3.3  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    28   5.7  

>At2g47820.1 68415.m05968 expressed protein
          Length = 805

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 607 RPNNNTIYPICKWKDSTRSCVIRELQSFGQ 518
           RP N  + P+C  + S   C +RE   FG+
Sbjct: 561 RPRNPKLLPVCTKRSSLADCTLREAGCFGE 590


>At1g15460.1 68414.m01858 anion exchange family protein member of
           the PF|00955 Anion exchanger family
          Length = 683

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 609 FDLITTLFIPFVSGRIVLD--HA*SVNSNPLGSMQNFTVIEIFR*NLIY 469
           F+ +T LF+P      VL+  HA  V   P  SM  FT+++IF   L Y
Sbjct: 516 FERLTLLFVPTSRRFKVLEGAHASFVEKVPYKSMAAFTLLQIFYFGLCY 564


>At3g02620.1 68416.m00253 acyl-[acyl-carrier-protein] desaturase,
           putative / stearoyl-ACP desaturase, putative similar to
           Acyl-[acyl-carrier protein] desaturase from Spinacia
           oleracea SP|P28645, Olea europaea SP|Q43593; contains
           Pfam profile PF03405 Fatty acid desaturase
          Length = 396

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = +1

Query: 133 PNHVSKSITISASWSIENNINHYKNETAVKIWILMKKQNWLLPLSVPF-SPLNPTHQFEA 309
           P H+  S T      + N + H    T  K+ I    +NW     + +  P+  + Q + 
Sbjct: 36  PRHLQVSKTFRPIKEVSNQVTH--TITQEKLEIFKSMENWAQENLLSYLKPVETSWQPQ- 92

Query: 310 VIMFNVLYSAKDYDTFYKTTVYMKDRVNQ--DLYIYVL 417
               + L   KD D FY+    ++DR  +  D Y  VL
Sbjct: 93  ----DFLPETKDEDRFYEQVKELRDRTKEIPDDYFVVL 126


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 346 YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHR 438
           Y   +KT V +  R N DLY+      HI++
Sbjct: 534 YGRIFKTVVILSSRKNSDLYVQEAKLDHIYK 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,093,089
Number of Sequences: 28952
Number of extensions: 273029
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)