Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H15
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   2e-44
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   5e-04
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)               35   0.043
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.13 
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.9  
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)                    27   8.6  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  175 bits (425), Expect = 2e-44
 Identities = 80/97 (82%), Positives = 91/97 (93%)
 Frame = +2

Query: 146 KLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 325
           K++EPILLLGKE+F GVDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE SKKEI+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 326 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 436
           DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 34/99 (34%), Positives = 48/99 (48%)
 Frame = +2

Query: 38  GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 217
           G +K + A A+  +G G + VN RP      RL Q K Q        +     D    V 
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396

Query: 218 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 334
           GGG   Q  AIR AIS+AL+ F + ++ E  ++EI + L
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESL 434


>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
          Length = 391

 Score = 34.7 bits (76), Expect = 0.043
 Identities = 29/80 (36%), Positives = 37/80 (46%)
 Frame = +2

Query: 197 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 376
           DI+V V GGG   Q  AI+  I++ALI F           ++K  L +     +  D R 
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF---------NADLKPTLSK--AGFVTRDARE 371

Query: 377 CEPKKFGGPGARARYQKSYR 436
            E KK G   AR R Q S R
Sbjct: 372 VERKKCGLRKARRRKQFSKR 391


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 272 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 382
           ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = +2

Query: 215 KGGGHVAQ--VYAIRQAISKALIAFYQKYV-DEASKKEIKDILVQYDRSLLVADPRRCEP 385
           K GGH++Q  +  I Q   K L A + K + DE  K++ K+I V+ +RS +    ++ EP
Sbjct: 91  KLGGHLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREP 150

Query: 386 K 388
           +
Sbjct: 151 E 151


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 5/23 (21%)
 Frame = -3

Query: 416  WHGRLDHRISWA-----RNDEGQ 363
            WHGRL++R SW+     RND  Q
Sbjct: 953  WHGRLNNRYSWSGKPKNRNDRSQ 975


>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
          Length = 273

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 94  ACKWTPP--RPGRTQTSSVQTTGTYPFARQGKVLWCGY*SDCKRWW 225
           +C W  P  +   TQT  VQT     + R      CG   DC+RWW
Sbjct: 168 SCSWHAPWDKLTLTQTKGVQTV----YKRN-----CGCRVDCQRWW 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,354,337
Number of Sequences: 59808
Number of extensions: 366728
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)