Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H15
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 223 5e-59
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 223 7e-59
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 221 2e-58
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 44 4e-05
At1g11480.1 68414.m01319 eukaryotic translation initiation facto... 29 1.3
At3g24255.1 68416.m03045 expressed protein 29 2.3
At5g40090.1 68418.m04863 disease resistance protein-related cont... 28 4.0
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 28 4.0
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi... 27 9.3
At1g43570.1 68414.m05001 hypothetical protein 27 9.3
At1g13000.1 68414.m01509 expressed protein contains Pfam profile... 27 9.3
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 223 bits (545), Expect = 5e-59
Identities = 99/145 (68%), Positives = 127/145 (87%)
Frame = +2
Query: 2 ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 181
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61
Query: 182 KFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 361
+F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121
Query: 362 ADPRRCEPKKFGGPGARARYQKSYR 436
ADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 223 bits (544), Expect = 7e-59
Identities = 98/145 (67%), Positives = 127/145 (87%)
Frame = +2
Query: 2 ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 181
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61
Query: 182 KFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 361
+F+GV++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121
Query: 362 ADPRRCEPKKFGGPGARARYQKSYR 436
ADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 221 bits (541), Expect = 2e-58
Identities = 96/139 (69%), Positives = 125/139 (89%)
Frame = +2
Query: 20 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 199
++VQ FGRKKTATAV YCKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+GVD
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 200 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRC 379
+R+ GGG+ ++VYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRC
Sbjct: 68 MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127
Query: 380 EPKKFGGPGARARYQKSYR 436
E KKFGGPGARAR+QKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 44.4 bits (100), Expect = 4e-05
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = +2
Query: 38 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 217
GR+K + A + + G G +VN + D+ P +L ++ L + DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 218 GGGHVAQVYAIRQAISKAL 274
GGG QV AI+ IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387
>At1g11480.1 68414.m01319 eukaryotic translation initiation
factor-related contains weak similarity to
Swiss-Prot:P23588 eukaryotic translation initiation
factor 4B (eIF-4B) [Homo sapiens]
Length = 578
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 446 NDINGRISGIWHGRLDHRISWARNDEGQRP 357
N ++G S IW+GR + +S A N+ GQ P
Sbjct: 146 NSVSGNHSNIWNGRKE--VSVANNEPGQSP 173
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -2
Query: 375 RRGSATSKLLSY*TRMSLISFLDASSTYFW*KAIRALEMACL 250
R G T++ LS+ R+ LIS + S T FW A R L AC+
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACI 182
>At5g40090.1 68418.m04863 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 385
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 173 GKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKE 319
G+E++ +++ K GGH+ +V+ + +A + ++ D +KE
Sbjct: 310 GREEWVAALLKLKAKQGGHIMEVWKLMEATDDKGLEEWETAADIVERKE 358
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 161 ILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKY 295
++ +G E+ V I ++ GGGH A AIR A I F KY
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK---IEFGDKY 101
>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 588
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 158 PILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAIS 265
P+L L + K S V+ RV V+ GH+A +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 378 QRRGSATSKLLSY*TRMSLISFLDASSTYFW*KAIR 271
+R S T + LSY R+ LI + S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At1g13000.1 68414.m01509 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 401
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 139 SVQTTGTYPFARQGKVLWCGY*SDCKRWWT 228
S+ + G+ A+ GK W G CKR WT
Sbjct: 349 SLPSLGSQGEAQDGKAGWQGVRDRCKREWT 378
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,986,705
Number of Sequences: 28952
Number of extensions: 253106
Number of successful extensions: 671
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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