Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H14
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    27   1.3  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   2.9  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   5.1  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.1  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    25   6.8  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 365 KFKNGKLNHWIFEFDCFNMF 424
           K KNGK N W++ F   N F
Sbjct: 570 KLKNGKENQWVWGFHASNFF 589


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 407 DCFNMFYDYIYNLYYSGTWEYFTWTKD 487
           DC N++Y++I++L+ S    YF   K+
Sbjct: 784 DC-NLYYEFIHSLHQSSLLPYFKTLKE 809


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 68 NIPSIFILCYCLWHK 24
          ++PSI+ILC+C  H+
Sbjct: 34 SLPSIYILCHCSKHQ 48


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 383 LNHWIFEFDCFNMFYDYIYNLYYSGTWEYFTWTK 484
           L+HWIF  + +     Y++NL          WTK
Sbjct: 176 LDHWIFVVEYYAPIVFYVFNLMGFFLAALHPWTK 209


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 231 NKILSEIDLPKIKYNI 278
           N++LSEI LP + Y+I
Sbjct: 74  NQVLSEISLPPVNYDI 89


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 177 PVPLAILTSTVQWLL*ILNKILSEIDLPKIKYNIIKDS 290
           P+P+  + S+ Q    +L K++  ID    KY++  D+
Sbjct: 307 PIPIFEIASSEQTCKNLLEKLIRFIDRASTKYSLPNDA 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,221
Number of Sequences: 5004
Number of extensions: 37683
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)