Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H14
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280           30   0.97 
09_02_0195 + 5643549-5645090                                           28   3.9  
09_06_0236 - 21781508-21783043,21783307-21783504                       28   5.2  
05_04_0397 - 20937280-20937386,20937494-20939681                       28   5.2  
03_02_0289 - 7115045-7115867,7116373-7116929,7117327-7117544,711...    28   5.2  
03_01_0241 - 1866625-1868082,1868892-1869080                           27   6.8  
07_03_1565 - 27760407-27760463,27760905-27761513                       27   9.0  
04_03_0054 - 10296278-10296727                                         27   9.0  

>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
          Length = 422

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = +2

Query: 389 HWIFEFDCFNMFYDYIYNLY-YSGTW-EYFTWTKD-----NLDLRPLYI 514
           HW+ +   +++ YD + NL+ +   W  Y T   D     N DLRPLY+
Sbjct: 130 HWMTQGSWYSISYDQLANLWGFDENWMRYMTHLHDIVIPHNHDLRPLYL 178


>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = +2

Query: 389 HWIFEFDCFNMFYDYIYNLY-YSGTW-EYFTWTKD-----NLDLRPLYI 514
           HW+ +   +++ YD + NL+ +   W  Y T   D     N DL PLY+
Sbjct: 221 HWMTQGSWYSISYDQLANLWGFDENWMRYMTHLHDIVIPHNHDLHPLYL 269


>09_06_0236 - 21781508-21783043,21783307-21783504
          Length = 577

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 494 PSYLWSM*NTPMFHCN 447
           P YLWS+   PMFHCN
Sbjct: 232 PVYLWSL---PMFHCN 244


>05_04_0397 - 20937280-20937386,20937494-20939681
          Length = 764

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 127 ARNLRPVCGSDGKTYHNQCLSQY 195
           ARNL P+ G DG+T    C+++Y
Sbjct: 406 ARNLIPMKGKDGRTTDAYCVAKY 428


>03_02_0289 -
           7115045-7115867,7116373-7116929,7117327-7117544,
           7117829-7117928,7118665-7118832
          Length = 621

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 177 PVPLAILTSTVQWLL*ILNKILSEIDLPKIKYNIIKDSL*FVLTSFVI 320
           PVP++IL    Q+LL  + ++ + I   +  YN   DS+  + ++F +
Sbjct: 502 PVPMSILWQAPQYLLVGIGEVFTAIGQAEFFYNQSPDSMRSLCSAFAL 549


>03_01_0241 - 1866625-1868082,1868892-1869080
          Length = 548

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 494 PSYLWSM*NTPMFHCN 447
           P+YLW++   PMFHCN
Sbjct: 221 PTYLWTV---PMFHCN 233


>07_03_1565 - 27760407-27760463,27760905-27761513
          Length = 221

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +2

Query: 83  RKYTPQQRCRRHARAQET*DRSADQTARLTTTSASRNTYVDCPVV 217
           R   P  + RRH  A E   R  D     T+    R T+ DC  V
Sbjct: 40  RVLPPAAKWRRHQLADEPRARPKDVVLYTTSLRGVRRTFADCSSV 84


>04_03_0054 - 10296278-10296727
          Length = 149

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 362 HKFKNGKLNHWIFEFDCFNMFYDYI 436
           H+ K+G  N   ++ DCFN   D+I
Sbjct: 50  HRHKSGITNKHYYQVDCFNDVIDWI 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,397,672
Number of Sequences: 37544
Number of extensions: 212862
Number of successful extensions: 512
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)