Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H14
(520 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 38 0.003
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 36 0.023
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 36 0.023
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 29 2.6
U27312-4|AAA68248.1| 405|Caenorhabditis elegans Hypothetical pr... 29 2.6
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 28 3.5
U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF317421-1|AAK69599.1| 235|Caenorhabditis elegans lysosomal-ass... 27 8.0
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 27 8.0
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 27 8.0
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 38.3 bits (85), Expect = 0.003
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 109 PSSCACARNLRPVCGSDGKTYHNQCLSQYLRR 204
P C C +RPVCG+D TY+N C + ++R
Sbjct: 16 PPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQR 47
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 121 ACARNLRPVCGSDGKTYHNQCLSQYLRRL 207
AC + PVC S+G+ N+C +R L
Sbjct: 871 ACPKEYSPVCASNGQNIVNECELDKIRCL 899
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 124 CARNLRPVCGSDGKTYHNQC-LSQY 195
C+R+++PVC T+ N C QY
Sbjct: 375 CSRDVKPVCDEANNTHQNLCHFQQY 399
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 124 CARNLRPVCGSDGKTYHNQC 183
C + P+C SD TY N C
Sbjct: 590 CTDDKHPICASDFSTYENLC 609
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 115 SCACARNLRPVCGSDGKTYHNQCLSQ 192
S C + P+CG++G T+ N C Q
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQ 794
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 35.5 bits (78), Expect = 0.023
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 121 ACARNLRPVCGSDGKTYHNQCLSQ 192
+C + VCGSDGKTY N+C Q
Sbjct: 467 SCTDEFKEVCGSDGKTYSNECRLQ 490
Score = 33.1 bits (72), Expect = 0.12
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 124 CARNLRPVCGSDGKTYHNQC 183
C N VCG+DGKTY N+C
Sbjct: 323 CTMNSAHVCGTDGKTYLNEC 342
Score = 31.1 bits (67), Expect = 0.49
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 115 SCACARNLRPVCGSDGKTYHNQC 183
+C + N P+CGSDG Y+NQC
Sbjct: 685 TCNLSSNY-PICGSDGIVYNNQC 706
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 124 CARNLRPVCGSDGKTYHNQC 183
C +RPVC ++G+T+ N+C
Sbjct: 397 CEDVMRPVCATNGETFDNEC 416
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 145 VCGSDGKTYHNQC 183
VCGSDG TY N C
Sbjct: 880 VCGSDGTTYSNLC 892
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 35.5 bits (78), Expect = 0.023
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 121 ACARNLRPVCGSDGKTYHNQCLSQ 192
+C + VCGSDGKTY N+C Q
Sbjct: 475 SCTDEFKEVCGSDGKTYSNECRLQ 498
Score = 33.1 bits (72), Expect = 0.12
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 124 CARNLRPVCGSDGKTYHNQC 183
C N VCG+DGKTY N+C
Sbjct: 331 CTMNSAHVCGTDGKTYLNEC 350
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 124 CARNLRPVCGSDGKTYHNQC 183
C +RPVC ++G+T+ N+C
Sbjct: 405 CEDVMRPVCATNGETFDNEC 424
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 145 VCGSDGKTYHNQC 183
VCGSDG TY N C
Sbjct: 819 VCGSDGTTYSNLC 831
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 112 SSCACAR-NLRPVCGSDGKTYHNQC 183
S C+C +L PVC +DG Y + C
Sbjct: 526 SQCSCENAHLYPVCSADGTAYFSPC 550
>U27312-4|AAA68248.1| 405|Caenorhabditis elegans Hypothetical
protein F26A1.8 protein.
Length = 405
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1
Query: 283 FIMLYLIFGRSISDNILFNIYNNHWTVDVSIARGTGCG 170
F++++ I+ + + LF YN++W + V++A G+ G
Sbjct: 75 FLLIHTIWWSTAIRHNLFQFYNDYWHMPVTMALGSFVG 112
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +1
Query: 112 SSCACARNLRPVCGSDGK---TYHNQCLSQ 192
S+C+C + PVC +G TY N+C+ Q
Sbjct: 23 STCSCKPEIDPVCVREGPYQYTYSNKCVFQ 52
>U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical
protein C05E11.3 protein.
Length = 235
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 342 YNKCCICISLKTGSLIIGYLNLIVLI 419
Y C C +KTG+ IIG +++++++
Sbjct: 38 YRCLCNCFHVKTGAFIIGCVHVLMIL 63
>AF317421-1|AAK69599.1| 235|Caenorhabditis elegans
lysosomal-associated transmembraneprotein protein.
Length = 235
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 342 YNKCCICISLKTGSLIIGYLNLIVLI 419
Y C C +KTG+ IIG +++++++
Sbjct: 38 YRCLCNCFHVKTGAFIIGCVHVLMIL 63
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 87 NIRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVP 185
++R +S+ +++RV+ K+ +RRQ PQP P
Sbjct: 566 SMRGSSSPILVRVQLSSKSPDSVRRQVQPQPQP 598
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 87 NIRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVP 185
++R +S+ +++RV+ K+ +RRQ PQP P
Sbjct: 788 SMRGSSSPILVRVQLSSKSPDSVRRQVQPQPQP 820
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,036,441
Number of Sequences: 27780
Number of extensions: 204269
Number of successful extensions: 606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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