Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H14
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.003
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   1.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 124 CARNLRPVCGSDGKTYHNQC 183
           C R  RPVC S+GK Y N C
Sbjct: 110 CPRRHRPVCASNGKIYANHC 129


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 494 PSYLWSM*NTPMFHCNIDYIYNHRTY*NN 408
           P  + S+ N  + + N  Y YN+  Y NN
Sbjct: 78  PKIISSLSNNTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 494 PSYLWSM*NTPMFHCNIDYIYNHRTY*NN 408
           P  + S+ N  + + N  Y YN+  Y NN
Sbjct: 78  PKIISSLSNNTIHNNNYKYNYNNNNYNNN 106


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 357 ICISLKTGSLIIGYLNLIVLIC 422
           I I+L  GS+I+G +   +L+C
Sbjct: 42  ILIALVLGSIIVGTVIGNILVC 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,237
Number of Sequences: 438
Number of extensions: 2714
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)