Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H14
(520 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27920.1 68416.m03483 trichome differentiation protein / GLAB... 29 1.9
At5g11650.1 68418.m01362 hydrolase, alpha/beta fold family prote... 28 3.3
At1g67640.1 68414.m07716 lysine and histidine specific transport... 28 3.3
At1g77270.1 68414.m08999 expressed protein 28 4.3
At3g59000.1 68416.m06576 F-box family protein contains F-box dom... 27 5.7
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 7.6
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit... 27 7.6
At2g05360.1 68415.m00564 hypothetical protein 27 7.6
At1g25530.1 68414.m03170 lysine and histidine specific transport... 27 7.6
At1g24400.1 68414.m03076 lysine and histidine specific transport... 27 7.6
At1g20560.1 68414.m02563 AMP-dependent synthetase and ligase fam... 27 7.6
>At3g27920.1 68416.m03483 trichome differentiation protein /
GLABROUS1 protein (GL1) identical to trichome
differentiation protein GL1 SP:P27900 from [Arabidopsis
thaliana]; contains Pfam profile: PF00249 Myb-like
DNA-binding domain
Length = 228
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -1
Query: 244 DNILFNIYNNHWTVDVS-IARGTG---CGKSCRL 155
DNIL + NH T + I R TG CGKSCRL
Sbjct: 24 DNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRL 57
>At5g11650.1 68418.m01362 hydrolase, alpha/beta fold family protein
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family; low similarity to monoglyceride lipase from
[Homo sapiens] GI:14594904, [Mus musculus] GI:2632162
Length = 390
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 357 CSIYYKRRPFCLISRSWL 304
CS++Y RR L SRSWL
Sbjct: 103 CSLFYGRRGNALFSRSWL 120
>At1g67640.1 68414.m07716 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GB:AAC49885 GI:2576361 (Arabidopsis
thaliana); contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 441
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 271 YLIFGRSISDNILFNIYNNHWTVDVSIA 188
Y IFG S+ DNIL + W + ++ A
Sbjct: 282 YYIFGNSVDDNILMTLEKPIWLIAIANA 309
>At1g77270.1 68414.m08999 expressed protein
Length = 682
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 57 TRYISDRRCANIRRNSAAVVMRVRKKLKT 143
TRY+ D + N R + + + R K+LKT
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKT 418
>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
Pfam:PF00646
Length = 491
Score = 27.5 bits (58), Expect = 5.7
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 213 WLL*ILNKILSEIDLPKIKYNIIKDSL*FVLTSFVISNKMAVVYNKCCICISLKTGSLII 392
W+ +LN+ +SE+DL I ++DS F S + + C I IS GS+ +
Sbjct: 103 WISNVLNRGVSELDLLIILGMTMEDSYRLSPKGFA-SKTLVKLEIGCGIDISWVAGSIFL 161
Query: 393 GYLNLIVL 416
L +VL
Sbjct: 162 PMLKTLVL 169
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 148 CGSDGKTYHNQCLSQYLRRLSSG 216
C S +TYH CL+ L+R+ +G
Sbjct: 76 CDSCPRTYHTACLNPPLKRIPNG 98
>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and
PF03931:Skp1 family, tetramerisation domain; identical
to cDNA UFO binding protein UIP2 mRNA, partial cds
GI:3719210
Length = 171
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 107 CRRHARAQET*DRSADQTARLTTTSAS 187
C+RH A E + +AD A TTT+ +
Sbjct: 60 CKRHVEAAEKSETTADAAAATTTTTVA 86
>At2g05360.1 68415.m00564 hypothetical protein
Length = 358
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 379 PVFKLMHMQHLL*TTAILFDITKLVNTNYKESFIMLYLIFGRSISDNILFNI 224
P+ L+H +L ++DI VNTN K + I LY + S+ + I
Sbjct: 298 PLGSLIHHAKIL--CRYIYDINVNVNTNMKLNLISLYTNLSNAFSNKRFYKI 347
>At1g25530.1 68414.m03170 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 440
Score = 27.1 bits (57), Expect = 7.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 280 IMLYLIFGRSISDNILFNIYNNHWTV 203
++ Y FG+ + DN+L N+ W +
Sbjct: 278 LICYWAFGQDVDDNVLMNLQRPAWLI 303
>At1g24400.1 68414.m03076 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 441
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 271 YLIFGRSISDNILFNIYNNHWTV 203
Y IFG S+ DNIL + W +
Sbjct: 282 YYIFGNSVDDNILITLEKPIWLI 304
>At1g20560.1 68414.m02563 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to adenosine monophosphate binding
protein 1 AMPBP1 (AMPBP1) GI:20799710
Length = 556
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 494 PSYLWSM*NTPMFHCN 447
P+YLW+ PMFHCN
Sbjct: 229 PTYLWT---NPMFHCN 241
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,846
Number of Sequences: 28952
Number of extensions: 183876
Number of successful extensions: 487
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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