Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H13
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566...    29   2.0  
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209...    29   3.5  
06_01_0137 - 1045301-1047601                                           29   3.5  
06_01_0124 - 958935-959967,959985-961222                               29   3.5  
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701...    28   4.7  

>05_04_0376 -
           20754386-20755392,20755683-20756320,20756433-20756627,
           20757730-20757795,20757942-20758007,20758402-20758445
          Length = 671

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 143 YQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNGMANAVDSIDH 313
           Y  ++D Q   ++ +L    +G   LK    N  + EYG  A +  G A ++  ++H
Sbjct: 141 YVSSVDVQWEDVYKALENLNDGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEH 197


>12_02_0795 +
           23217463-23217684,23218296-23219155,23220001-23220929,
           23221184-23221968
          Length = 931

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 26  IFVWLFVFAEGGDKKKCDVI-VIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEV 202
           + + L    EG   +K  VI ++      K  L ++V    +L   +Q    F SLS + 
Sbjct: 264 VVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFR--KLESQFQCRA-FVSLSQQP 320

Query: 203 NGKTVLKSAYFNTKTNEYGEI 265
           + K ++++ Y      EYG I
Sbjct: 321 DVKKIVRNIYCQVSQQEYGNI 341


>06_01_0137 - 1045301-1047601
          Length = 766

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 167 TSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNG 283
           T+ ++ +++ E+  +  LK  YF+T    YG++  I  G
Sbjct: 634 TARVYGTMTTELKRELGLKGYYFSTDATRYGKMMAIAGG 672


>06_01_0124 - 958935-959967,959985-961222
          Length = 756

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 167 TSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNG 283
           T+ ++ +++ E+  +  LK  YF+T    YG++  I  G
Sbjct: 624 TARVYGAMTTELKRELGLKGYYFSTDATRYGKMMAIAGG 662


>11_06_0247 -
           21669299-21669348,21669673-21670012,21670110-21670199,
           21670280-21670339,21670564-21670856,21671176-21671245,
           21671623-21671970,21673188-21673318,21673418-21673901,
           21674839-21675558
          Length = 861

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 340 SLHVRLHYQESYKPRYHRL*HMANVFLPSSW 432
           S+H+ LH    + PR HRL H++    P  W
Sbjct: 11  SIHLHLHLHLHHPPRLHRLLHLSTT-SPYPW 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,267
Number of Sequences: 37544
Number of extensions: 285926
Number of successful extensions: 640
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)