Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H11
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 27 2.0
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.7
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 3.6
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 6.2
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 25 8.3
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 8.3
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 25 8.3
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase... 25 8.3
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.3
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 25 8.3
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -2
Query: 591 GQHDDVIAEPRTGLSDHLLRFHTADRTSDQISDR 490
G + AEP++G+ +H+L+ T D T +++ ++
Sbjct: 183 GPESEPEAEPKSGIKEHILQ-ETGDATVEELQNK 215
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 92 FFNNCMRFFKASSLS 48
F NNC++F+KA SL+
Sbjct: 632 FLNNCLKFYKAFSLT 646
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 212 SHFISKVACQSLPCYSPRLLEHTKSRRNPRHLVQINDTSSQSTFCRVVQ*ILRRGLLYCL 391
S I K +SLP Y P T R L+ ++T+ + +C+ + +L L+YC
Sbjct: 258 SEEIEKDLTRSLPDY-PAYQSPTGINTLRRILLFYSETNKEVGYCQAMNIVLAALLVYCT 316
Query: 392 KLPSHLL 412
+ ++ L
Sbjct: 317 EEQAYFL 323
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 6.2
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = +1
Query: 4 YSVYALKALGKGSVFDKEDALKNLIQLLKKDDSPVNYGYVFALCEHMGCGTWTVTHAEGV 183
Y +Y + K +K K + ++LKK DS V+ +A EH+ G +T+ AE +
Sbjct: 594 YLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVWNTYAQLEHLS-GAFTM--AETI 650
Query: 184 LLAADETDSKSLHFEGGLPV 243
+ + L + L V
Sbjct: 651 FKTIFQIHASQLRYIDNLNV 670
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 215 HFISKVACQSLPCYSPRLLEHT 280
+FI+ +AC SL C+S L+ ++
Sbjct: 418 NFITSIACLSLLCFSASLMANS 439
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Frame = +1
Query: 415 DVPTPISIAXKGKKYVT------SESDSVEFSITDLIGRPVRSMKTE 537
DVP P+ + G YVT SES V F++ G RS E
Sbjct: 970 DVPLPLRASSLGSPYVTRNEESASESSHVMFTLLTKRGNKQRSQYLE 1016
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -3
Query: 434 LIGVGTSSASVMAASSNRAAPFAEFTERRDRRYSANLYR*SALNG 300
+ +G S +A ++ + ++ER+ +S+ LY SAL+G
Sbjct: 48 IYSMGKKSFPFLAIANALVQGYLSYSERKRSIFSSKLYAISALSG 92
>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 10 VYALKALGKGSVFDKEDALKNLIQLLKK 93
+YA K + K + K+D +KN I +LK+
Sbjct: 56 MYAAKIMNKKMMEKKQDFVKNEIAILKR 83
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 67 KNLIQLLKKDDSPVNYGYVFALCEHMGCGTWTVTHAEGVLLAADETDSKSLHFEG 231
+++I L+K D + G + H G G T+ A ++ +E + SLH++G
Sbjct: 86 RDIIPLVKGFDGYLQPGSSLLVLGHEGSGGSTLLKALCGIVEENERLNGSLHYDG 140
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 83 C*RRMILLLTMGTFLPYANTWDAARGLLLMRRVCCWPL 196
C R+I+ +T+G LP + ++ G + R + C PL
Sbjct: 155 CFSRVIVNVTLGAPLPQQKSLGSSIGHMATRCISCRPL 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.132 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,260
Number of Sequences: 5004
Number of extensions: 45446
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -